Sequence 1: | XP_009292297.1 | Gene: | rxrba / 30530 | ZFINID: | ZDB-GENE-980526-436 | Length: | 480 | Species: | Danio rerio |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001259168.1 | Gene: | usp / 31165 | FlyBaseID: | FBgn0003964 | Length: | 508 | Species: | Drosophila melanogaster |
Alignment Length: | 540 | Identity: | 206/540 - (38%) |
---|---|---|---|
Similarity: | 280/540 - (51%) | Gaps: | 135/540 - (25%) |
- Green bases have known domain annotations that are detailed below.
Zfish 7 SRSPDSSSVSSPPSGQRSPPLAPSAAAMTSLPPITSAVNSPISSMGSPFSVISSSLGSPCLPGTP 71
Zfish 72 SVGYGPISSPQMNMFPRNAEINSTVSMSGLHAVSSSDDVKPPFGLKPLSSHSPGPMVSQKRLCAI 136
Zfish 137 CGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKR 201
Zfish 202 EVVQDERQRSVQEERQR------NKERDGEVESSS--------------------------AANE 234
Zfish 235 EMPVEKILEAEMAVEQK------TELHADGSSGGSSPNDP-----VTNICQAADKQLFTLVEWAK 288
Zfish 289 RIPHFSELSLDDQVILLRAGWNELLIASFSHRSI-TVKDG------------------------- 327
Zfish 328 -ILLATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 391
Zfish 392 ILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 456
Zfish 457 FKLIGDTPIDTFLMEMLEAP 476 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rxrba | XP_009292297.1 | Nuc_recep-AF1 | 21..126 | CDD:288658 | 14/104 (13%) |
NR_DBD_RXR | 133..208 | CDD:143514 | 61/74 (82%) | ||
NR_LBD_RXR_like | 235..458 | CDD:132741 | 108/260 (42%) | ||
usp | NP_001259168.1 | NR_DBD_RXR | 102..178 | CDD:143514 | 61/75 (81%) |
NR_LBD_RXR_like | 237..480 | CDD:132741 | 108/260 (42%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C170577459 | |
Domainoid | 1 | 1.000 | 188 | 1.000 | Domainoid score | I3237 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 365 | 1.000 | Inparanoid score | I2124 |
OMA | 1 | 1.010 | - | - | QHG45637 | |
OrthoDB | 1 | 1.010 | - | - | D389616at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001500 | |
OrthoInspector | 1 | 1.000 | - | - | otm25754 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103349 | |
Panther | 1 | 1.100 | - | - | O | PTHR24083 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4818 |
SonicParanoid | 1 | 1.000 | - | - | X118 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.940 |