DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tnn and Nrg

DIOPT Version :9

Sequence 1:NP_001100659.2 Gene:Tnn / 304913 RGDID:1306002 Length:1562 Species:Rattus norvegicus
Sequence 2:NP_001245581.1 Gene:Nrg / 31792 FlyBaseID:FBgn0264975 Length:1309 Species:Drosophila melanogaster


Alignment Length:939 Identity:178/939 - (18%)
Similarity:323/939 - (34%) Gaps:247/939 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat   293 LSYYPLGK--EQATKQVRVPKEQHTYDITGLLPGT--KYIVTLRN----VKKDISSSPQHLLATT 349
            :|:...||  ||:|...|.....:|..|..|:.|.  .|.....|    |.||:           
  Fly   370 ISWIHNGKPIEQSTPNPRRTVTDNTIRIINLVKGDTGNYGCNATNSLGYVYKDV----------- 423

  Rat   350 DLAVVGTAWVNEETETSLDVEWENPLTEVDYYKLRYGPLTGQEVT-EVTVPKSRDPKSRY-DITG 412
                    ::|.:.|.....|....::.||          |:.|| :..|..|..|..:: ..:.
  Fly   424 --------YLNVQAEPPTISEAPAAVSTVD----------GRNVTIKCRVNGSPKPLVKWLRASN 470

  Rat   413 LQPGTEYKITVVPIRGDLEGKPILLN-------------GRTEIDG-------------PTNVVT 451
            ...|..|.   |...||||.:.:..:             |..:.||             |.|...
  Fly   471 WLTGGRYN---VQANGDLEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVKEHTRITQEPQNYEV 532

  Rat   452 ----------NQVTEDTASVSWDPVRADIDKYVVRYISHDGETKE-KAVPK-----DQSSTVLTG 500
                      |:..:||..:       :||.:      .||::.: :|.|:     |.|.|:...
  Fly   533 AAGQSATFRCNEAHDDTLEI-------EIDWW------KDGQSIDFEAQPRFVKTNDNSLTIAKT 584

  Rat   501 LKPGEAYKVFVWAERGNQGSKKADTKALTEIDSPENLVTDRVTENSLSVSWD-------PVEAEI 558
            ::........|...|.::.:.:|:. .:.::.:...|.......:...:.|:       |:....
  Fly   585 MELDSGEYTCVARTRLDEATARANL-IVQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYT 648

  Rat   559 DRYVVSYT--SVDGETKQVPVRKDQSSTVLTGLSPGVEYKVYV------WAEKGDRESKKANTKA 615
            .::..|:|  |.|...::||   :..|:.:..:||...|...|      .|......|....|:.
  Fly   649 IQFNTSFTPASWDAAYEKVP---NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQP 710

  Rat   616 PTDIDSPKNLVTDQVTENTLSVSWDP---VQANID--RYMVSYTSADGETREVPVPK-------- 667
            .....:|.|:|......|.|.:||.|   ::.|..  .|.||:      .|::|...        
  Fly   711 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSW------KRDIPAAAWENNNIFD 769

  Rat   668 -EKSSTVLTGLRPGMEYKVHVWAQKGTQESRKANTKA------PTDIDGPKNLVTDQVTETTLS- 724
             .:::.|:......::|.:.|.|.....||..|..:.      ...:|.|.|....|:|.:|.. 
  Fly   770 WRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDRPLDAPTNFTMRQITSSTSGY 834

  Rat   725 VSWDPVEADIDR-----YMVR-YTSPDGE--TKEVPVSKDKSSTVLRGLRPGVEYKVDVWAQKG- 780
            ::|.||..:..|     |.:: :|..:||  .:|:.|..|..:.::...:|..:....:.|..| 
  Fly   835 MAWTPVSEESVRGHFKGYKIQTWTENEGEEGLREIHVKGDTHNALVTQFKPDSKNYARILAYNGR 899

  Rat   781 --AQDSRKANTKAPTDIDSP-KNLVTEQVTESTATVSW-DPV--EADIDRYVVRYTSVD----GE 835
              ...|...:...|..:.|| :.|....:..|...:.| .|:  ...:..|.:.|..|.    ||
  Fly   900 FNGPPSAVIDFDTPEGVPSPVQGLDAYPLGSSAFMLHWKKPLYPNGKLTGYKIYYEEVKESYVGE 964

  Rat   836 TREF---LVGKDQTSTILTGMKPGVEYQVDVWAQKGTRES-----RKTSTKAPTDIDGPKNLVTD 892
            .||:   :.....|...:.|:||..:|::.:.|.....|.     .||:.|...:          
  Fly   965 RREYDPHITDPRVTRMKMAGLKPNSKYRISITATTKMGEGSEHYIEKTTLKDAVN---------- 1019

  Rat   893 QVTETTLSVSWDPVEAD--IDRYMVRYTSP---------------DGETKEVPVSKDKSSTV--L 938
             |...|.|.||:.:.:|  :.::.:.:...               .|||:.:..:::|:|..  :
  Fly  1020 -VAPATPSFSWEQLPSDNGLAKFRINWLPSTEGHPGTHFFTMHRIKGETQWIRENEEKNSDYQEV 1083

  Rat   939 RGLRPGVEYKVDVWAQKGAQDSRKANTKAPTD-IDSPKNLAINQVTETTLSVSWD-----PVQAD 997
            .||.|...|:..|.:..|..::..|..:..|: ::.|    |....||..:..|.     .:...
  Fly  1084 GGLDPETAYEFRVVSVDGHFNTESATQEIDTNTVEGP----IMVANETVANAGWFIGMMLALAFI 1144

  Rat   998 IDRYVV-------RYTSADGESKEFLIGKEQ--------------------RSTVLTGLRPGVEY 1035
            |..:::       |....|...:|...|:..                    |.:|.:..:||||.
  Fly  1145 IILFIIICIIRRNRGGKYDVHDRELANGRRDYPEEGGFHEYSQPLDNKSAGRQSVSSANKPGVES 1209

  Rat  1036 KVEVWAQKG----------ARESKKANTK 1054
            ..:..|:.|          ||.:..|.:|
  Fly  1210 DTDSMAEYGDGDTAVATAAARAAAAARSK 1238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TnnNP_001100659.2 EGF_2 <142..166 CDD:285248
EGF_2 169..197 CDD:285248
EB 181..233 CDD:279949
EGF_2 233..259 CDD:285248
fn3 264..332 CDD:278470 12/42 (29%)
fn3 359..434 CDD:278470 18/76 (24%)
fn3 444..521 CDD:278470 18/105 (17%)
FN3 532..608 CDD:214495 15/90 (17%)
FN3 620..696 CDD:214495 18/89 (20%)
fn3 708..785 CDD:278470 20/88 (23%)
fn3 796..875 CDD:278470 20/94 (21%)
fn3 884..961 CDD:278470 17/95 (18%)
fn3 972..1049 CDD:278470 20/118 (17%)
FN3 1060..1136 CDD:214495
FN3 1148..1224 CDD:214495
fn3 1236..1313 CDD:278470
FReD 1327..1540 CDD:238040
NrgNP_001245581.1 Ig 55..128 CDD:299845
IG_like 57..127 CDD:214653
Ig 135..214 CDD:299845
IG_like 141..216 CDD:214653
ig 251..332 CDD:278476
I-set 339..427 CDD:254352 16/75 (21%)
Ig 354..427 CDD:299845 16/75 (21%)
I-set 432..517 CDD:254352 19/97 (20%)
Ig 446..517 CDD:299845 16/73 (22%)
I-set 522..611 CDD:254352 17/102 (17%)
ig 525..609 CDD:278476 17/96 (18%)
FN3 613..707 CDD:238020 16/96 (17%)
FN3 716..807 CDD:238020 21/96 (22%)
fn3 817..905 CDD:278470 20/87 (23%)
FN3 917..1004 CDD:238020 19/86 (22%)
FN3 1041..1111 CDD:238020 12/69 (17%)
Bravo_FIGEY 1155..>1221 CDD:290593 12/65 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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