DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gata4 and grn

DIOPT Version :9

Sequence 1:NP_571311.2 Gene:gata4 / 30483 ZFINID:ZDB-GENE-980526-476 Length:352 Species:Danio rerio
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:324 Identity:133/324 - (41%)
Similarity:155/324 - (47%) Gaps:79/324 - (24%)


- Green bases have known domain annotations that are detailed below.


Zfish     8 AANHGAASYESGFLHNSTSPVYVTPTRVTPMIQALPYLQAPQQSSPASGHSGWAQPGVETTSYNS 72
            ||...:|:..|..|.:.|:..|                  ....|...|..|....|.:|:||.|
  Fly   311 AAVAASAATSSNGLFDGTAQAY------------------SSGGSGGGGGGGSGSGGYDTSSYAS 357

Zfish    73 ---STGHHHS---PVSRFTFSTSPPLTSGRDTATYTSREHFGSRALSGSYHSGYPAYVSPNIGAS 131
               :..||.:   ..:....|:|....:.|.:.......|......||.:|||            
  Fly   358 YHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSG------------ 410

Zfish   132 WTASHFDSSVLHSL---------------QTGGA-------AAARHPNLEFFD---------DLG 165
                  .||.||.|               .:|||       .|..:......|         ...
  Fly   411 ------SSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSA 469

Zfish   166 EGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLVKPQRRL------SASRRVGLSC 224
            ||||||||||.|||||||||||||||||||||:||||.||||:||:|||      ||::|.|.||
  Fly   470 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSC 534

Zfish   225 TNCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNISKTKPGSSEG 288
            .||:|||||||||||.|||||||||||.|||.|.|||.|||||||||.||..:.||.|.|...|
  Fly   535 ANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGG 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gata4NP_571311.2 GATA-N 1..158 CDD:283099 35/177 (20%)
ZnF_GATA 165..210 CDD:214648 39/44 (89%)
ZnF_GATA 169..219 CDD:238123 43/55 (78%)
ZnF_GATA 221..268 CDD:214648 38/46 (83%)
ZnF_GATA 223..274 CDD:238123 42/50 (84%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 41/46 (89%)
ZnF_GATA 473..517 CDD:238123 38/43 (88%)
ZnF_GATA 529..578 CDD:214648 39/48 (81%)
ZnF_GATA 533..583 CDD:238123 42/49 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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