DRSC/TRiP Functional Genomics Resources

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Protein Alignment gata5 and pnr

DIOPT Version :9

Sequence 1:NP_571310.2 Gene:gata5 / 30482 ZFINID:ZDB-GENE-980526-340 Length:383 Species:Danio rerio
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:366 Identity:151/366 - (41%)
Similarity:183/366 - (50%) Gaps:75/366 - (20%)


- Green bases have known domain annotations that are detailed below.


Zfish    14 YAHDSGNYIH-----PSASSPVYVPTTRVPAM----------LQTLPYLQTCESSHQAHGISSHH 63
            |.|.||:|.:     .|||:......|.|.|:          ...|....:..|:....|:|.:|
  Fly    20 YPHFSGDYQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYH 84

Zfish    64 AWPQTGTDNSSFNPGSP-HPPPGFSYSHSPPVSSSTGRDAAYQNPLMLSNGGRADQYGSALVRSV 127
                    ..:.|  :| :.|....|:|   |::..|..||       .|....:.:|||     
  Fly    85 --------QQAVN--APVYVPSNRQYNH---VAAHFGSAAA-------QNAWTTEGFGSA----- 124

Zfish   128 GGSYSSPYAAYMSPEMATSWTPGPFDGGMIGLQGRQGTLPGRRSSIDMLDDLPC-EGRECVNCGS 191
            ...:.||.||.|.....:::.|..|.               |.|..:...|... |||||||||:
  Fly   125 HAQFYSPNAAVMMGSWRSAYDPSGFQ---------------RSSPYESAMDFQFGEGRECVNCGA 174

Zfish   192 ISTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQKRLQS--TSRRAGLCCTNCHTSTTTLWRR 254
            |||||||||||||||||||||||||||:|||||||.|||.|  .:||.|||||||.|.|||||||
  Fly   175 ISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRR 239

Zfish   255 NAEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKMPKTKSSSGSTVSGATSPTSLPVSEN 319
            |.:|||||||||||.|||||.|||||:|:.|||||||||    |:.|||.|...|...:....|.
  Fly   240 NNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPK----KTGSGSAVGAGTGSGTGSTLEA 300

Zfish   320 ASTIKSEPSIAASPYAGQTVVSVTQASTQLDSASSAHVDIK 360
            ....|.|..:..|            .|.:..|.|..|.|:|
  Fly   301 IKECKEEHDLKPS------------LSLERHSLSKLHTDMK 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gata5NP_571310.2 GATA-N 1..173 CDD:283099 38/174 (22%)
ZnF_GATA 182..228 CDD:214648 43/45 (96%)
ZnF_GATA 185..236 CDD:238123 44/52 (85%)
ZnF_GATA 236..285 CDD:214648 39/48 (81%)
ZnF_GATA 241..291 CDD:238123 40/49 (82%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 43/47 (91%)
ZnF_GATA 168..212 CDD:238123 40/43 (93%)
ZnF_GATA 223..270 CDD:214648 38/46 (83%)
ZnF_GATA 226..276 CDD:238123 40/49 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575126
Domainoid 1 1.000 81 1.000 Domainoid score I8459
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I3441
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm25579
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 1 1.000 - - X1091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.880

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