DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gata2a and grn

DIOPT Version :9

Sequence 1:XP_009304056.1 Gene:gata2a / 30480 ZFINID:ZDB-GENE-980526-260 Length:460 Species:Danio rerio
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:658 Identity:207/658 - (31%)
Similarity:264/658 - (40%) Gaps:275/658 - (41%)


- Green bases have known domain annotations that are detailed below.


Zfish    11 MAH-HHAVLNGQHPESHHHGLTHNYMEPMAPLLPPDEVDVFLNHLDSQGN--PYYSNSRARVSYG 72
            :|| ||::.:|........|:...........|...::..|. .|:|.|:  .||.      ||.
  Fly    48 LAHSHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFY-ALESNGHHRRYYP------SYH 105

Zfish    73 QAHARLTGS----QVCRPHLIHSPGIPWLDSGKAALSAAHHNAWAVSHFSKP------------- 120
            |..:|:..:    |||||| .|:|..|||.|...:.:.|  :||::..|:.|             
  Fly   106 QHTSRMPSTHASPQVCRPH-FHTPLSPWLTSEHKSFAPA--SAWSMGQFACPQEPQVEHKLGQMG 167

Zfish   121 GLHPASAAYPCSSSSSTAPVSSLTSATHSSPHPLYNFPPTPPKDVSPD---PGPS---------- 172
            ..|..:||                 ..||.|     ||||||||.:||   .|||          
  Fly   168 QSHQTTAA-----------------GQHSFP-----FPPTPPKDSTPDSVQTGPSEYQAVMNAFM 210

Zfish   173 --SPTSTTARMDEKESIKYQVSIADG----------------MKMEG------------------ 201
              ..|.:|:..|...::..:.||.:|                .:.||                  
  Fly   211 HQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQ 275

Zfish   202 ------------------------------CSPLRGSLAMSAQTPST------------------ 218
                                          .:.|..::|.||.|.|.                  
  Fly   276 QQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGGSGGG 340

Zfish   219 ------------------HHPIPTYPTYSLPAP--------------------------HDYGGG 239
                              ||....:...::.|.                          |.:..|
  Fly   341 GGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSG 405

Zfish   240 LFHPGTLL-------------------------------SGSASSFTPKC------KSKTRSCSE 267
            ..|.|:..                               ||:.|:....|      ::|.|:.: 
  Fly   406 HHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSA- 469

Zfish   268 FCTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL------SAARRAG 326
               ||||||||||||||||||||||||||||||||:||||||||||||||||      |||:|||
  Fly   470 ---EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAG 531

Zfish   327 TCCANCQTTTTTLWRRNGNGDPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKMSSKSKRSKRSG 391
            |.||||:||||||||||.:|:||||||||||||||||||||||||||||||||:|||||:.|..|
  Fly   532 TSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLG 596

Zfish   392 EG------------FEELSKCMQDKTSPFGS--ASALASHMPHMGHLPPFSHSGHMLPTPTPIHP 442
            .|            |:.|     |.:..||.  ::::|.|    |||    .||        :||
  Fly   597 GGCLPIGGHLGMGDFKPL-----DPSKGFGGGFSASMAQH----GHL----SSG--------LHP 640

Zfish   443 TFSHPHHS 450
            ..:|.|.|
  Fly   641 AHAHMHGS 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gata2aXP_009304056.1 ZnF_GATA 271..318 CDD:214648 45/46 (98%)
ZnF_GATA 274..324 CDD:238123 48/55 (87%)
ZnF_GATA 324..373 CDD:214648 43/48 (90%)
ZnF_GATA 329..377 CDD:238123 43/47 (91%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 45/46 (98%)
ZnF_GATA 473..517 CDD:238123 42/43 (98%)
ZnF_GATA 529..578 CDD:214648 43/48 (90%)
ZnF_GATA 533..583 CDD:238123 44/49 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8335
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 277 1.000 Inparanoid score I2903
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1240204at2759
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm25026
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.960

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