DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lyl1 and Fer1

DIOPT Version :9

Sequence 1:NP_001007678.1 Gene:Lyl1 / 304663 RGDID:1359244 Length:278 Species:Rattus norvegicus
Sequence 2:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster


Alignment Length:139 Identity:40/139 - (28%)
Similarity:59/139 - (42%) Gaps:25/139 - (17%)


- Green bases have known domain annotations that are detailed below.


  Rat   143 HQP-------QKVARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGF 200
            |:|       |...:|...|.|||.|.|.:|.||..||..:||.|.:::|||.:.|:||:.||.|
  Fly    73 HKPRRLKCASQMAQQRQAANLRERRRMQSINEAFEGLRTHIPTLPYEKRLSKVDTLKLAISYITF 137

  Rat   201 LVRLLRDQAAVLASGPSAPG------SRKPPAHRGVEGNARCGAGHRVEAARSQPVLPGD----- 254
            |..:::..     ...:.||      .:|.|..:.:..:...|..|.:...|.....||.     
  Fly   138 LSEMVKKD-----KNGNEPGLSLQRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGSKLYAR 197

  Rat   255 --CDGDPNG 261
              ...||.|
  Fly   198 TWTPEDPRG 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lyl1NP_001007678.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
HLH 155..207 CDD:197674 24/51 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..278 12/62 (19%)
Fer1NP_001262334.1 HLH 92..144 CDD:197674 24/51 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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