DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gata3 and pnr

DIOPT Version :9

Sequence 1:NP_571286.1 Gene:gata3 / 30458 ZFINID:ZDB-GENE-990415-82 Length:438 Species:Danio rerio
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:447 Identity:149/447 - (33%)
Similarity:186/447 - (41%) Gaps:154/447 - (34%)


- Green bases have known domain annotations that are detailed below.


Zfish    90 LDGGKSIGPHHSTSPWNLGPFPKTSLHHSSPGPLSVYPPASSSSLSAGHSSPHLFTFPPTPPKDV 154
            |..|.|.....||.     .:|     |.|....:|...|:|:|.||..|:.|:           
  Fly     5 LSDGDSTSDQQSTR-----DYP-----HFSGDYQNVTLSAASASTSASASATHV----------- 48

Zfish   155 SPDPAISTSGSGSSVRQEDKECIKYQVSLAESMKLDSAHSRSMASIGAGASSAHHPIATYPSYVP 219
                        ::|:......:.....||      :|.|.:.|.:|.|.|..|......|.|||
  Fly    49 ------------AAVKMYHSSAVAAYTDLA------AAGSAASAGVGVGVSGYHQQAVNAPVYVP 95

Zfish   220 D------------------------YGPG---LFPPSS--LIGGSSSSYGSKTRPK--TRSS--- 250
            .                        :|..   .:.|::  ::|...|:|.    |.  .|||   
  Fly    96 SNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYD----PSGFQRSSPYE 156

Zfish   251 -------SEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL---SAARR 305
                   .||||||||||.||||||||||||||||||||||||||.|||||||.:||   :|.||
  Fly   157 SAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRR 221

Zfish   306 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSSKS----- 365
            .|..|.||.|.||||||||.:|:|||||||||||||.:||||.|:|:|||||.||.....     
  Fly   222 MGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAV 286

Zfish   366 ---------------KKSKKSHD-----SMEDFSKSLME---KNSSFSPAAL------------- 394
                           |:.|:.||     |:|..|.|.:.   |:.:.|.:.|             
  Fly   287 GAGTGSGTGSTLEAIKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQ 351

Zfish   395 -------------SRHMTSFPPFSHSGHMLTTPTPMHPSSSLPFASHHPSSMVTAMG 438
                         |.|...||.:..     ||....|        ..|..||.::.|
  Fly   352 QQQQQQQQQQQQQSAHQQCFPLYGQ-----TTTQQQH--------QQHGHSMTSSSG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gata3NP_571286.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..173 14/72 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..255 9/34 (26%)
ZnF_GATA 251..299 CDD:214648 43/47 (91%)
ZnF_GATA 255..305 CDD:238123 43/52 (83%)
ZnF_GATA 305..354 CDD:214648 34/48 (71%)
ZnF_GATA 309..360 CDD:238123 37/50 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 350..378 14/52 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 405..438 6/32 (19%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 43/47 (91%)
ZnF_GATA 168..212 CDD:238123 40/43 (93%)
ZnF_GATA 223..270 CDD:214648 33/46 (72%)
ZnF_GATA 226..276 CDD:238123 37/49 (76%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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