DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncam1a and robo3

DIOPT Version :9

Sequence 1:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio
Sequence 2:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster


Alignment Length:791 Identity:177/791 - (22%)
Similarity:282/791 - (35%) Gaps:180/791 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    16 YAAALQVEITPTQGEISVGESKFFLCEVVGDAKEIDWFAPNGEKLLPGRPDISISKTDESSSTLT 80
            |...:.::|.|....|::.....|..:||...:|.|                             
  Fly    57 YKDGVPLKILPGSHRITLPAGGLFFLKVVNSRRETD----------------------------- 92

Zfish    81 IYNANVDHAGMYKCVAKS--GEKESQGTIIVKIFQKLTFQYAPSPQEFNEGDDADIICDVISS-P 142
                    ||:|.|.||:  |...|:...:.....:..|:..|......:||.|.:.|..... |
  Fly    93 --------AGIYWCEAKNELGVARSRNATLQVAVLRDEFRLEPQNTRIAQGDTALLECAAPRGIP 149

Zfish   143 PPTIIWRYKKMRIQPETDVRLKVLSNNHLQIRGIKKTDEGDYTCEGRIMARGEIDLR---VIKVI 204
            .||:.|:....::..|...|::::...:|.|:..::||||.|.|    :|:..:.:|   :..:.
  Fly   150 EPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQDARQTDEGQYQC----IAKNPVGVRESSLATLK 210

Zfish   205 VNVLP-SIRTRYTELNATADINQAVTLACHADGYPEPTVKWAR----GNTELESDEKYSLNEDGS 264
            |:|.| .||..:.:   |.....:||..|...|.|.|.|.|.|    ||..|   ::.|:.||.|
  Fly   211 VHVKPYIIRGPHDQ---TVLEGASVTFPCRVGGDPMPDVLWLRTASGGNMPL---DRVSVLEDRS 269

Zfish   265 ELTIKDVNKLDEGDYKCIARNKAGERSEEVTLNVFVQPKITFLENQTASELEEQITLTCEATGDP 329
             |.::.|...|||:|.|.|.|..|..:...||.|:..||........:.||....:..|.|.|:|
  Fly   270 -LRLERVTIADEGEYSCEADNVVGAITAMGTLTVYAPPKFIQRPASKSVELGADTSFECRAIGNP 333

Zfish   330 TPNIIWSFGRRVFTENEQASWTRPEKHKS---------LDGNVVVRSDARVSSLTLKYVQFTDAG 385
            .|.|.|:.                 |:.|         ||....:.::...|.|||...|.||..
  Fly   334 KPTIFWTI-----------------KNNSTLIFPGAPPLDRFHSLNTEEGHSILTLTRFQRTDKD 381

Zfish   386 -QYLCTARNSIGQDIQSMYL-----EVRYAP-KIQGPQAVFTWEGNPANITCEALAHPGASVLWF 443
             ..||.|.|.:......:.|     |.|..| .|.||........:.|.:.|:|:..|..::.|:
  Fly   382 LVILCNAMNEVASITSRVQLSLDSQEDRPPPIIISGPVNQTLPIKSLATLQCKAIGLPSPTISWY 446

Zfish   444 RDGQQLPSANTTNVKIYNTPTVSFLEVTPDSQNDFGSYNCTATNVIGTES-KEFILV-------- 499
            |||..:..::..|:.......:|.|    |.|.|.|.|.|.|::..|..: ..|:.:        
  Fly   447 RDGIPVQPSSKLNITTSGDLIISDL----DRQQDQGLYTCVASSRAGKSTWSGFLRIELPTNPNI 507

Zfish   500 -------QADVPSAPSIERVEPYSSTAM-IEFEEPASSGGVPVLKYKAEWRIAGQD--WTDREYE 554
                   |...||||...::...:::|: |.:.....:|....|.|..|.....|.  |......
  Fly   508 KFYRAPEQTKCPSAPGQPKILNATASALTIVWPTSDKAGASSFLGYSVEMYCTNQSRTWIPIASR 572

Zfish   555 LEDGLNLITIVGLKPETTYEVKISAINGKGEGESSAPESFKTQPVRLPFRMSPETPTSIPPTTAD 619
            |.:  .:.|:..|.....|...:.|.|..|                    .||.:|.|.|.|...
  Fly   573 LSE--PIFTVESLTQGAAYMFIVRAENSLG--------------------FSPPSPISEPITAGK 615

Zfish   620 IKGEPNPPKLEAKPQSTGNEMKV-----HFIKQDDGGSPIKHYLVRYRAKNRQD-------WKPE 672
            :.|      :....:|||....:     ..::.:|        :|.....|..|       |..:
  Fly   616 LVG------VRDGSESTGTSQLLLSDVETLLQAND--------VVELLEANASDSTTARLSWDID 666

Zfish   673 IRMPDASDYIVLRGLDWNTEYEVYVIAENQRGRSEPGTLSFRTLPEPTAIPETSSGLGTGAIVGI 737
            ........|:..|.|. ::||::..:....:|      ||..|:|          ||...:....
  Fly   667 SGQYIEGFYLYARELH-SSEYKMVTLLNKGQG------LSSCTVP----------GLAKASTYEF 714

Zfish   738 LIVVFILLLFG 748
            .:|.|...:.|
  Fly   715 FLVPFYKSIVG 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncam1aXP_009293555.1 Ig 20..112 CDD:299845 16/93 (17%)
I-set 21..111 CDD:254352 16/91 (18%)
IG_like 121..200 CDD:214653 21/82 (26%)
IGc2 128..189 CDD:197706 18/61 (30%)
Ig 208..301 CDD:299845 33/97 (34%)
IG_like 219..298 CDD:214653 29/82 (35%)
Ig 300..406 CDD:299845 27/120 (23%)
IG_like 308..406 CDD:214653 25/112 (22%)
ig 413..498 CDD:278476 22/85 (26%)
IG_like 415..498 CDD:214653 21/83 (25%)
fn3 505..589 CDD:278470 18/86 (21%)
FN3 624..715 CDD:238020 16/102 (16%)
robo3NP_608592.2 Ig 22..117 CDD:299845 17/96 (18%)
I-set 23..116 CDD:254352 17/95 (18%)
I-set 122..211 CDD:254352 22/92 (24%)
Ig 125..211 CDD:299845 21/89 (24%)
I-set 215..302 CDD:254352 32/93 (34%)
Ig 232..302 CDD:299845 28/73 (38%)
I-set 306..401 CDD:254352 26/111 (23%)
Ig 320..411 CDD:299845 25/107 (23%)
I-set 412..492 CDD:254352 23/83 (28%)
IGc2 429..489 CDD:197706 18/63 (29%)
FN3 519..612 CDD:238020 24/114 (21%)
FN3 644..735 CDD:238020 20/107 (19%)
fn3 743..832 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13817
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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