DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brd2a and fs(1)h

DIOPT Version :9

Sequence 1:NP_571275.2 Gene:brd2a / 30445 ZFINID:ZDB-GENE-990415-248 Length:836 Species:Danio rerio
Sequence 2:NP_001259321.1 Gene:fs(1)h / 31722 FlyBaseID:FBgn0004656 Length:2046 Species:Drosophila melanogaster


Alignment Length:1176 Identity:406/1176 - (34%)
Similarity:512/1176 - (43%) Gaps:466/1176 - (39%)


- Green bases have known domain annotations that are detailed below.


Zfish    46 FEGPALPHIAQSGPPQPAVRDPS-RQGRMTNQLQFLQKALVKTLWRHHFAWPFHEPVDAAKLNLP 109
            :|.|..|   .:|..||.|..|: |.||.|||||:|.|.::|.:|:|||:|||.:||||.|||||
  Fly    10 YEPPVEP---VNGIVQPPVIPPAERPGRNTNQLQYLIKTVMKVIWKHHFSWPFQQPVDAKKLNLP 71

Zfish   110 DYYNIIKQPMDMGTIKKRLENNYYRSASECMQDFNTMFTNCYIYNKPTDDIVLMAQSLEKAFLQK 174
            ||:.||||||||||||||||||||.||.|.:|||||||.|||:||||.:|:|:|||:|||.||||
  Fly    72 DYHKIIKQPMDMGTIKKRLENNYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQK 136

Zfish   175 VAQMPEVEEEIPAPVPRGKQSK------PKK---GQKLFSGGITTAHQVP------------AIS 218
            :..||:.|.|:.....:|.:.|      ||.   |....:|..|::..|.            |.|
  Fly   137 IESMPKEELELEPVTAKGGKKKQRAPATPKSSSGGAGASTGSGTSSAAVTSGPGSGSTKVSVAAS 201

Zfish   219 SLSQLAY---------SPPTPDT-PDS-----------------VLST-------------PPQT 243
            |..|...         |..||.| |.|                 |.||             ||.|
  Fly   202 SAQQSGLQGATGAGGGSSSTPGTQPGSGAGGAIAARPVSAMGGTVSSTAGGAPSIPPISTMPPHT 266

Zfish   244 L--------------------------------------ITKNFPPPP----LHSTPALLG---- 262
            :                                      .|..:|..|    ::|:..|.|    
  Fly   267 VPGSTNTTTTAMAGGVGGPGAAGANPNAAALMASLLNAGQTGAYPGAPGQTAVNSSSLLDGSTAA 331

Zfish   263 ------------------------------------------------------LPPTQPTAKKK 273
                                                                  :||.||...||
  Fly   332 VAAAAAAAAAAAAAAGGAAGAAGGAGTIPAVAVNAANAVQAYVNAGVSVGVDAVIPPQQPAKIKK 396

Zfish   274 GVKRKADTTTPTTTVMPLTLGVGGMGMGMGMGMSMGMGMGMGLGGDSPLTLSNMGMDSKQSLSLS 338
            ||||||||||||....                             :||.|    .||||.:    
  Fly   397 GVKRKADTTTPTANAF-----------------------------ESPYT----QMDSKSA---- 424

Zfish   339 LGMSLEDKVPARR---------GGSGRPIKP-PRKDLPD--------------SQNQHQPVRRGK 379
                   |:..||         .|||..:.| ....:|.              ::|:.      |
  Fly   425 -------KIATRRESNRQVIGKKGSGYNMSPLGVSGVPGLGGLVAGGVAGVAVAKNKE------K 476

Zfish   380 LSQQLRYCSTILKELLSKKHTAYAWPFYKPVDVSSLGLHDYYDIIMYPMDLSTIKRKMDHREYRD 444
            ||..|:.|:.|||||.||||:.||||||||||...||||||:|||..||||.|:|||||:|||:.
  Fly   477 LSDALKSCNEILKELFSKKHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNREYKS 541

Zfish   445 ALQFAADVRLMFSNCYKYNPPDHDVVAMARRLQDVFEFRFAKMPDEPLESLP------------- 496
            |.:|||||||:|:|||||||||||||||.|:||||||.|:|.:||||:.:..             
  Fly   542 APEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANIPDEPVANAAHHHGHGHGHGHGH 606

Zfish   497 --------PASLGGGLGGDSSSSSSSSSSSSESDVSSESESESSPSSDSEEERAHRLAQLQEQVC 553
                    ....|.|.||.||....:|.||||.  ||::|:|    |:|:|||:.||..|:    
  Fly   607 GHGHGHGHGHGHGHGYGGSSSLKHDASDSSSED--SSDTENE----SNSDEERSARLKMLE---- 661

Zfish   554 TQLRAVHEQLAALSSTPIIKPKKKKEKKDKKK-------KKKPEKHKRSR--------------- 596
            ::|..:.|::..||.....|.|.||:.|:|||       ......|..:.               
  Fly   662 SKLLGLQEEIRKLSEEASAKKKAKKKLKEKKKSIGGGSGSGSASHHCHATGGGANAGGAGGPGSG 726

Zfish   597 ------------------------------SVIEDEVVMRPAKIPKL------------------ 613
                                          |::..........:|.:                  
  Fly   727 GHGSVSVPGGVGSLGPGGAGGANLNALLGGSLVGHGGAAVAGGVPNVGALHSQVHDVAMAFSQMA 791

Zfish   614 -------------------------------------------------PKTPKSR--------- 620
                                                             .|..||:         
  Fly   792 GGGAAAGAGFGAGVTAAGASSGGKAGTLAGALAAGAAAGAGGTTAGSGSSKGAKSKGGRGAKGSG 856

Zfish   621 ------SNSKAA------------------------------TSTQSKKSSNK-------KSNKS 642
                  ||:.||                              .|.::|.||:.       .:|.|
  Fly   857 AGGVGASNNAAAGNAAGGAAGAAAGAGSVGGVGGAGAAGGGNASKRAKGSSSAGAGGGVGGANAS 921

Zfish   643 ------KSSKKAQPTFFPPPLSHSGLTPHYDSEEEEETSPMSYDEKRQLSLDINRLPGEKLGRVV 701
                  :.|.|.:|:          ...::|||||:...|||||||||||||||:|||:||||||
  Fly   922 AGGAGARGSSKKKPS----------QVMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVV 976

Zfish   702 HIIQSREPSLRDTNPEEIEIDFETLKPSTLRELERYVMMCLRKKP-RKPFVAIKGSAGKSREELA 765
            ||||:|||||||:||:||||||||||||||||||.||..|||||. :||       :|||::|..
  Fly   977 HIIQNREPSLRDSNPDEIEIDFETLKPSTLRELESYVASCLRKKTHKKP-------SGKSKDEQM 1034

Zfish   766 LEKKRELERRLQDVSGQLNSVKKPQKTKAEKPSAVEPHAVASRLSASSSSSDSSSSSSS-SSSSD 829
            .|||:|||:|||||:|||.:.||..|......|.||....|:.:|:||||||||||||| |||||
  Fly  1035 AEKKQELEKRLQDVTGQLGASKKTAKKDESASSKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSD 1099

Zfish   830 TSESDS 835
            :|:|::
  Fly  1100 SSDSEA 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brd2aNP_571275.2 Bromo_Brdt_I_like 72..178 CDD:99929 76/105 (72%)
Bromo_Brdt_II_like 383..484 CDD:99930 74/100 (74%)
BET 676..738 CDD:293640 55/61 (90%)
fs(1)hNP_001259321.1 Bromo_Brdt_I_like 34..140 CDD:99929 76/105 (72%)
COG5076 387..>593 CDD:227408 117/255 (46%)
Bromo_Brdt_II_like 481..581 CDD:99930 74/99 (75%)
BET 951..1015 CDD:293640 57/63 (90%)
BRD4_CDT <2026..2046 CDD:293710
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 152 1.000 Domainoid score I4284
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000322
OrthoInspector 1 1.000 - - otm24226
orthoMCL 1 0.900 - - OOG6_100249
Panther 1 1.100 - - LDO PTHR22880
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3378
SonicParanoid 1 1.000 - - X197
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.800

Return to query results.
Submit another query.