DRSC/TRiP Functional Genomics Resources

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Protein Alignment brd2a and tbrd-3

DIOPT Version :9

Sequence 1:NP_571275.2 Gene:brd2a / 30445 ZFINID:ZDB-GENE-990415-248 Length:836 Species:Danio rerio
Sequence 2:NP_726307.1 Gene:tbrd-3 / 246604 FlyBaseID:FBgn0050417 Length:268 Species:Drosophila melanogaster


Alignment Length:379 Identity:97/379 - (25%)
Similarity:137/379 - (36%) Gaps:131/379 - (34%)


- Green bases have known domain annotations that are detailed below.


Zfish   381 SQQLRYCSTILKELLSKKHTAYAWPFYKPVDVSSLGLHDYYDIIMYPMDLSTIKRKMDHREYRDA 445
            |.::..|..|:|.|.|..:...||.||:|:|...||||||::|:..||||||::.:::...|..|
  Fly    11 SPEINACKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDYHEIVREPMDLSTVRHRLNTGCYLSA 75

Zfish   446 LQFAADVRLMFSNCYKYNPPDHDVVAMARRLQDVFEFRFAKMPDEPLESLPPASLGGGLGGDSSS 510
            ..||.|:||:|.|.|.|..|||....||::||.:||..::::      .|...|.|..:..:..|
  Fly    76 ADFAKDIRLIFYNTYLYTNPDHLCYHMAKQLQIIFEEMYSQV------QLYICSSGSKVRAEEES 134

Zfish   511 SSSSSSSSSESDVSSESESESSPSSDSEEERAHRLAQLQEQVCTQLRAVHEQLAALSSTPIIKPK 575
            ||..|.|||..|  ..:.||.|||                               :...|     
  Fly   135 SSDESDSSSPED--EVNGSEVSPS-------------------------------IMGAP----- 161

Zfish   576 KKKEKKDKKKKKKPEKHKRSRSVIEDEVVMRPAKIPKLPKTPKSRSNSKAATSTQSKKSSNKKSN 640
                                           |:..|....||                       
  Fly   162 -------------------------------PSCTPTTECTP----------------------- 172

Zfish   641 KSKSSKKAQPTFFPPPLSHSGLTPHYDSEEEEETSPMSYDEKRQLSLDINRLPGEKLGRVVHIIQ 705
                    .|.:.||.          ..|..|:..|.:.:|...|...|.:|.||.|..|:|.||
  Fly   173 --------TPDWTPPA----------TLETSEQQEPFTTEEDLDLHAKIQQLDGEVLLHVIHFIQ 219

Zfish   706 SREPSLRDTNPEEIEIDFETLKPSTLRELERYVMMCLRKKPRKPFVAIKGSAGK 759
            ..|.:  :...:|:|.|...||..|.|.:..|             :|.||..||
  Fly   220 RMEGA--EYCNKELEFDICKLKVHTKRGIRDY-------------LASKGFTGK 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brd2aNP_571275.2 Bromo_Brdt_I_like 72..178 CDD:99929
Bromo_Brdt_II_like 383..484 CDD:99930 44/100 (44%)
BET 676..738 CDD:293640 20/61 (33%)
tbrd-3NP_726307.1 Bromo_Brdt_II_like 13..114 CDD:99930 44/100 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000322
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22880
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X197
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.910

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