DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax2a and ey

DIOPT Version :9

Sequence 1:XP_021336168.1 Gene:pax2a / 30425 ZFINID:ZDB-GENE-990415-8 Length:519 Species:Danio rerio
Sequence 2:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster


Alignment Length:692 Identity:201/692 - (29%)
Similarity:282/692 - (40%) Gaps:229/692 - (33%)


- Green bases have known domain annotations that are detailed below.


Zfish    20 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGSYQKDLIRYYE 84
            |.||||||||||.||||||..||:||||||.|.|||||||.|:||:||||||||       ||||
  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG-------RYYE 155

Zfish    85 TGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 149
            ||||:|..||||||:|||.:||.||::|||:.|::||||||||||.|.||.||.:||||||||::
  Fly   156 TGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVL 220

Zfish   150 RTKVQQPFHPSSDGTGTPLSTAGHTI---------GDLESTPYTL--TYSCALSVPSTASPPVSS 203
            |....|. ...|.|:|:..::||::|         |::.:.....  |.|.:..:..||:|..||
  Fly   221 RNLAAQK-EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSS 284

Zfish   204 ----ASNDPVGS-----YSINGILGIPRSNGE--------------------KRKRDDVLWSGNH 239
                |||...||     |....:|....:.|.                    .|.....|..|||
  Fly   285 ESGGASNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNH 349

Zfish   240 ----------------------------------------------------------------- 239
                                                                             
  Fly   350 QALQQHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIG 414

Zfish   240 -----------------LDGRKIGYYGSDGSGPNSD----SQGSVES------LRKHLRAD--AF 275
                             |||.:....|| |.|.||:    :.|:.|.      |::.|:.:  :|
  Fly   415 HQRNCPVATEDIHLKKELDGHQSDETGS-GEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSF 478

Zfish   276 TQQQLEALDRVFERPSYPDVFPTSEHIKPEQANEYSLPAL---------------NPGLDEVKPS 325
            |..|:::|::.|||..|||||     .:...|.:..||..               ...|...:.:
  Fly   479 TNDQIDSLEKEFERTHYPDVF-----ARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRT 538

Zfish   326 LSTSVSSDLGSSVSQSYPVVTESHSSSMCVKQEPHEASLAPFT---PSSLAVSGLAELLPLQPS- 386
            .:::.:|...||.|.:..:....:|.|.|       :||...:   ||...::||:     .|| 
  Fly   539 PNSTGASATSSSTSATASLTDSPNSLSAC-------SSLLSGSAGGPSVSTINGLS-----SPST 591

Zfish   387 VSVDASTPCYGA----------YAHHAPSYCQYTSQHIIAGREMASTTLPGYPPHVPPTGQGSYP 441
            :|.:.:.|..||          ..|..|| |...:.:   ||:.........|   .|.|.|.:.
  Fly   592 LSTNVNAPTLGAGIDSSESPTPIPHIRPS-CTSDNDN---GRQSEDCRRVCSP---CPLGVGGHQ 649

Zfish   442 T-------------STLAGMVPGSDFS----GNPYSHPQYT--TYNEAWRFSNPALLMPHPG-AP 486
            .             :.:..:.|..:|:    |..||:..:|  :.::::....|.....|.. .|
  Fly   650 NTHHIQSNGHAQGHALVPAISPRLNFNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGP 714

Zfish   487 GLPLLPLP----MTATSYH------RSPVKLQDHGRGLHIVP 518
            ..|..|:|    :|.:|.:      |.|.....|.   ||||
  Fly   715 LAPPSPIPQQGDLTPSSLYPCHMTLRPPPMAPAHH---HIVP 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax2aXP_021336168.1 PAX 19..150 CDD:128645 93/129 (72%)
Pax2_C 391..500 CDD:315141 26/142 (18%)
eyNP_001014693.1 PAX 98..221 CDD:128645 93/129 (72%)
Homeobox 475..527 CDD:278475 15/56 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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