DRSC/TRiP Functional Genomics Resources

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Protein Alignment pax2a and Poxm

DIOPT Version :9

Sequence 1:XP_021336168.1 Gene:pax2a / 30425 ZFINID:ZDB-GENE-990415-8 Length:519 Species:Danio rerio
Sequence 2:NP_001036687.1 Gene:Poxm / 40990 FlyBaseID:FBgn0003129 Length:370 Species:Drosophila melanogaster


Alignment Length:489 Identity:167/489 - (34%)
Similarity:217/489 - (44%) Gaps:148/489 - (30%)


- Green bases have known domain annotations that are detailed below.


Zfish    20 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGSYQKDLIRYYE 84
            :|.|||||||||||||||:..|.||||||..|:||||||||||||||||||||.       ||:|
  Fly    10 YGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQLRVSHGCVSKILA-------RYHE 67

Zfish    85 TGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 149
            ||||.||.||||||:|.|||||..|.|.|:::|.:||||||||||:||:||...|||||||:||:
  Fly    68 TGSILPGAIGGSKPRVTTPKVVNYIRELKQRDPGIFAWEIRDRLLSEGICDKTNVPSVSSISRIL 132

Zfish   150 RTKVQQPFHPSSDGTGTPLSTAGHTIGDLESTPYTLTYSCALSVPSTASPPVSSASNDPVGSYSI 214
            |.|               |.:.||     :.||.|:               :.|.|:...||.|.
  Fly   133 RNK---------------LGSLGH-----QHTPGTV---------------MGSGSSSGGGSVSS 162

Zfish   215 NGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYYGSDGSGP------NSDSQGSVESLRKHLRAD 273
            ||    .::||..        :.|:::   :...|:.|.||      :.....:..:...|:.|.
  Fly   163 NG----GQNNGTS--------ASNNIN---LSNLGNPGGGPHHPHHHHHHQSAAAAASAHHVHAH 212

Zfish   274 AFTQQQLEALDRVFERPSYPDVF-PTSEHIKPEQANEYSLPALNPGLDEVKPSLSTSVSSDLGSS 337
            |.....|           |..:: |.|      .|..||:..         |..|.|.....|..
  Fly   213 AHAHAHL-----------YNSIYQPYS------AAAAYSMKT---------PCGSPSPPQGAGGQ 251

Zfish   338 VSQSYPVVTESHSSSMCVKQEPHEASLAPFTPSSLAVSGLAELLPLQPSVSVDASTPCYGAYAHH 402
            .|..:|....|.::          |:.|...|||.:||   ::|....:|::.||          
  Fly   252 GSVPHPHQLRSVAA----------AAAAAHWPSSHSVS---DILAHHQAVALRAS---------- 293

Zfish   403 APSYCQYTSQHIIAGR-EMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSDFSG-----NPYSH 461
                ||....  :.|. .|.||..|     :|.|..   |.:..||..|..|..|     :||::
  Fly   294 ----CQVGVG--VGGMGGMGSTVSP-----LPMTPS---PVAGTAGGQPLLDCEGGAGQQSPYNY 344

Zfish   462 PQYTTYNEAWRFSNPALLMPH-------PGAPGL 488
            ..|        |.|..:...|       .||.||
  Fly   345 YMY--------FQNGGMHHHHHHGGMMAAGATGL 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pax2aXP_021336168.1 PAX 19..150 CDD:128645 92/129 (71%)
Pax2_C 391..500 CDD:315141 27/111 (24%)
PoxmNP_001036687.1 PAX 10..133 CDD:128645 92/129 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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