DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxd10a and unpg

DIOPT Version :9

Sequence 1:NP_571241.2 Gene:hoxd10a / 30404 ZFINID:ZDB-GENE-990415-116 Length:332 Species:Danio rerio
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:398 Identity:92/398 - (23%)
Similarity:132/398 - (33%) Gaps:158/398 - (39%)


- Green bases have known domain annotations that are detailed below.


Zfish    53 PALGKRGEVNHQNMDMT------------VHSYI----PQTDTWADPSRSCRLEQPLNQMSTCTF 101
            |||.:.||:.......|            :.|.|    |.|.|...|......||...|      
  Fly     4 PALLQNGEIGTMESPTTRLASKPFPKPFSIESLIANQTPATATPPSPPEERDQEQEAEQ------ 62

Zfish   102 SQSIKEETNCCMYSDKRAKVSSS-----EIPAY---------------SSLIPESCSVDS----- 141
                ::|.:.      ||.|:||     :.|.|               :.||...|.:.|     
  Fly    63 ----EQELSA------RAMVASSALGLTQFPLYNPWLHGYFAQNHERLTHLIAGGCYLPSSPAGH 117

Zfish   142 -----------------------------PEIPVP--------------------GYFRLSQTYA 157
                                         |.:|.|                    .|.||    |
  Fly   118 PAAQQPQAQAQPQPPPPHPPTHALEKQLPPTLPHPLDTRFLPFNPAAAGVAPTDLSYRRL----A 178

Zfish   158 TAKNPDYDNETM-----------------SPNTTLMQLNRAT-PKAQSTPF-------VEVEKKL 197
            ...|.||.:...                 ..|..:.||...| |:|.|:|.       :|....:
  Fly   179 ELMNQDYVHSLSVHARLQHMAAAGRMHEDQANPGMAQLQEPTPPQAHSSPAKSGSHSPMEPALDV 243

Zfish   198 AHDRDTRSS-----------SPA-------QSPEPKVSTLEEKNCS-TEASVSSPELPHREGKES 243
            ..|.|...|           ||.       :|.....:..:.::|| .|.:.|..|.....||:|
  Fly   244 GMDEDFECSGDSCSDISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSDDEGAQSRHEGGGMGGKDS 308

Zfish   244 KNDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQN 308
            :.:..:||   :|| |::|..:|..|.||||:||....||:...|.:|:.|:.|::.||||||||
  Fly   309 QGNGSSSN---SKS-RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQN 369

Zfish   309 RRMKLKKM 316
            ||.|.|::
  Fly   370 RRAKWKRV 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxd10aNP_571241.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..261 19/85 (22%)
COG5576 204..>321 CDD:227863 44/132 (33%)
Homeobox 261..314 CDD:278475 26/52 (50%)
unpgNP_477146.1 Homeobox 324..375 CDD:278475 25/50 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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