DRSC/TRiP Functional Genomics Resources

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Protein Alignment pou3f1 and pdm2

DIOPT Version :9

Sequence 1:NP_571236.1 Gene:pou3f1 / 30398 ZFINID:ZDB-GENE-980526-372 Length:368 Species:Danio rerio
Sequence 2:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster


Alignment Length:309 Identity:131/309 - (42%)
Similarity:161/309 - (52%) Gaps:58/309 - (18%)


- Green bases have known domain annotations that are detailed below.


Zfish    88 QSREDLGNGYHRSHLVHQPTQNSHHGSWAPTTTHHLS-----PLSPASN--GHQSLVYSQTGYTM 145
            |.|||....| .:.|...|.::.   |.:|...|..|     |.|..:|  |..|.|.:....:|
  Fly   590 QQREDPLPSY-STPLAKSPLRSP---SLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSM 650

Zfish   146 LSPQPSLHHGLRDPLHDDAGSHDNQMESPQQPFS--------HHQDHSDEDAPSSDDLEQFAKQF 202
             ..||.|                  .:|..:|.|        ...:.|.|:....::||||||.|
  Fly   651 -QQQPQL------------------QQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTF 696

Zfish   203 KQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSNT--- 264
            |||||||||||.|||||:|.||||.||||||.|||||.|||||||||||||.||||:.||..   
  Fly   697 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKS 761

Zfish   265 -GSPTNLDKIAAQ---------GRKRKKRTSIEVGVKGALENHFLKCPKPSAHEITTLAGTLQLE 319
             |...|::.:.:.         ||:||||||||..|:..||..||...||::.||:.|:..|.::
  Fly   762 GGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMD 826

Zfish   320 KEVVRVWFCNRRQKEKRMTPVGVPHPTMEDVYSQAETPPLHHTLQSPVQ 368
            |||:|||||||||||||:.|       ..|:.|...||...|....|.|
  Fly   827 KEVIRVWFCNRRQKEKRINP-------SLDLDSPTGTPLSSHAFGYPPQ 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou3f1NP_571236.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..88 131/309 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..134 10/40 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..193 8/53 (15%)
POU 187..261 CDD:197673 57/73 (78%)
Homeobox 282..335 CDD:278475 30/52 (58%)
pdm2NP_001285877.1 POU 691..755 CDD:197673 54/63 (86%)
Homeobox 789..842 CDD:278475 30/52 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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