DRSC/TRiP Functional Genomics Resources

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Protein Alignment pou3f3a and pdm2

DIOPT Version :9

Sequence 1:NP_571225.2 Gene:pou3f3a / 30386 ZFINID:ZDB-GENE-980526-220 Length:446 Species:Danio rerio
Sequence 2:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster


Alignment Length:294 Identity:127/294 - (43%)
Similarity:160/294 - (54%) Gaps:79/294 - (26%)


- Green bases have known domain annotations that are detailed below.


Zfish   169 QSQQSLIYSQPGGFTVN--GMLNPPGSLVHPGLMRGESPEMDHHHHHHHHQQQHPHHHHHHQHHA 231
            :|||.   :.|...|.|  ||.:        .:|...:|.|         |||........:..:
  Fly   621 KSQQR---TPPNSMTANSLGMSS--------AVMTPNTPSM---------QQQPQLQQSTPKPTS 665

Zfish   232 GVNSHDS-----HSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRF 291
            |:....:     .|.|:|...::||||||.||||||||||||.|||||:|.||||.||||||.||
  Fly   666 GLTVASAMAKLEQSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 730

Zfish   292 EALQLSFKNMCKLKPLLNKWLEEADST------------------TGSPTSIDKIAAQGRKRKKR 338
            |||.|||||||||||||.||||:||||                  :.:|.||     .||:||||
  Fly   731 EALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESI-----LGRRRKKR 790

Zfish   339 TSIEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKRM-------TPPG 396
            ||||.:|:..||..||...||:::||:.|::.|.::|||:|||||||||||||:       :|.|
  Fly   791 TSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSLDLDSPTG 855

Zfish   397 VPQTPEDVYTHA-----------------GNGSF 413
            .|     :.:||                 |:|||
  Fly   856 TP-----LSSHAFGYPPQALNMSHMQMEGGSGSF 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou3f3aNP_571225.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..43
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 102..172 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..248 12/66 (18%)
POU 242..316 CDD:197673 58/73 (79%)
Homeobox 337..390 CDD:278475 30/52 (58%)
pdm2NP_001285877.1 POU 691..755 CDD:197673 54/63 (86%)
Homeobox 789..842 CDD:278475 30/52 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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