DRSC/TRiP Functional Genomics Resources

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Protein Alignment cyp26a1 and Cyp4d1

DIOPT Version :9

Sequence 1:NP_571221.2 Gene:cyp26a1 / 30381 ZFINID:ZDB-GENE-990415-44 Length:492 Species:Danio rerio
Sequence 2:NP_476907.2 Gene:Cyp4d1 / 31188 FlyBaseID:FBgn0005670 Length:512 Species:Drosophila melanogaster


Alignment Length:508 Identity:122/508 - (24%)
Similarity:199/508 - (39%) Gaps:103/508 - (20%)


- Green bases have known domain annotations that are detailed below.


Zfish    15 VLPVLLFLAAVKLWEMLMIRRVDPNCRSPLPPGTMGLPFIGETLQLILQRRKFLRMKRQKYGCIY 79
            :|...||:..: |:.:...|.:|.....|.||   .||.:|                       :
  Fly     8 ILASALFVGLL-LYHLKFKRLIDLISYMPGPP---VLPLVG-----------------------H 45

Zfish    80 KTHLFGNPT----------VRVMGADNVRQILLGEHKLVSVQWPASVRTILGSDTLSNVHGVQ-- 132
            ..|..|.|.          :.....|.|.::.||....|.:..|..|..:||:...::..|..  
  Fly    46 GHHFIGKPPHEMVKKIFEFMETYSKDQVLKVWLGPELNVLMGNPKDVEVVLGTLRFNDKAGEYKA 110

Zfish   133 -----------------HKNKKKAIMRAFSRDALEHYIPVIQQEVKSAIQEWLQK-----DSCVL 175
                             || ::|.|..||....|:.::.|.::..:..::...|.     ||...
  Fly   111 LEPWLKEGLLVSRGRKWHK-RRKIITPAFHFKILDQFVEVFEKGSRDLLRNMEQDRLKHGDSGFS 174

Zfish   176 VYPEMKKLMFRIAMRILLGFEPEQIKTDEQELVEAFE--EMI--KNLFSLPIDVPFSGLYR---- 232
            :|..:............:|.........:.|.|:|.:  .|:  |.:|::        |||    
  Fly   175 LYDWINLCTMDTICETAMGVSINAQSNADSEYVQAVKTISMVLHKRMFNI--------LYRFDLT 231

Zfish   233 ---------GLRARNFIH---SKI-----EENIR----KKIQDDDNENEQKYKDALQLLIENSRR 276
                     ..:|.|.:|   .||     ||.||    ::..:||.:...|.|.|...::..|..
  Fly   232 YMLTPLARAEKKALNVLHQFTEKIIVQRREELIREGSSQESSNDDADVGAKRKMAFLDILLQSTV 296

Zfish   277 SDEPFSLQAMKEAATELLFGGHETTASTATSLVMFLGLNTEVVQKVREEVQEKVEMGMYTPGKGL 341
            .:.|.|...::|.....:|.||:||:|........:..:.|..:|..||::..|.....||   :
  Fly   297 DERPLSNLDIREEVDTFMFEGHDTTSSALMFFFYNIATHPEAQKKCFEEIRSVVGNDKSTP---V 358

Zfish   342 SMELLDQLKYTGCVIKETLRINPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADVFPN 406
            |.|||:||.|....:|||||:.|.||...|..|:..|:||..||.|.|:..|........::|..
  Fly   359 SYELLNQLHYVDLCVKETLRMYPSVPLLGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSE 423

Zfish   407 KDEFQPERF-MSKGLEDGSRFNYIPFGGGSRMCVGKEFAKVLLKIFLVELTQH 458
            .:.|:|||| :....|..:.:.||||..|.|.|:|::||.:.:|..:..:.:|
  Fly   424 PNIFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRH 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cyp26a1NP_571221.2 p450 14..487 CDD:299894 122/508 (24%)
Cyp4d1NP_476907.2 p450 35..507 CDD:278495 116/480 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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