DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arvcf and p120ctn

DIOPT Version :9

Sequence 1:NP_001124485.1 Gene:Arvcf / 303798 RGDID:1306655 Length:973 Species:Rattus norvegicus
Sequence 2:NP_001036444.1 Gene:p120ctn / 3355143 FlyBaseID:FBgn0260799 Length:781 Species:Drosophila melanogaster


Alignment Length:669 Identity:274/669 - (40%)
Similarity:381/669 - (56%) Gaps:91/669 - (13%)


- Green bases have known domain annotations that are detailed below.


  Rat   284 STATRRRPEYGRGLR-----ARALEDTADDTGELVEE--RPPFPAATAPLAQPERGSLGSLDRVV 341
            :|.:..:|..||...     |.|:.|:...|.:...|  .|.| |.::....|:|  |...|..:
  Fly   148 NTTSSIKPFSGRPFNDNINGAEAVADSQCRTFKSSAEFKLPQF-AMSSINTVPQR--LEEKDDYI 209

  Rat   342 RRSPS-VDSTRKEPRWRDPELPEVLAMLRHPVDPVKANAAAYLQHLCFENEGIKRRVRQLRGLPL 405
            ..|.: :.||.   |||||.|.||::.|.:|...:||||||||||||:.::..|:|.|.|.|:|.
  Fly   210 EGSENDICSTM---RWRDPNLSEVISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPP 271

  Rat   406 LVALLDHPRAEVRRRACGALRNLSYGRDAD-NKAAIRDCGGVPALVRLLRAARDNEVRELVTGTL 469
            ||.||.:...|:.:.||||||||||||..| ||..|::.||:.|||.||..:::.||:|||||.|
  Fly   272 LVRLLSYDSPEIHKNACGALRNLSYGRQNDENKRGIKNAGGIAALVHLLCRSQETEVKELVTGVL 336

  Rat   470 WNLSSYEPLKMVIIDHGLQTLTHEVIVPHSGWEREPNEDSKPRDAE------WTTVFKNTSGCLR 528
            ||:||.|.||..|||..|..:...||.|||||           ||.      ::|||:|.||.||
  Fly   337 WNMSSCEDLKRSIIDEALVAVVCSVIKPHSGW-----------DAVCCGETCFSTVFRNASGVLR 390

  Rat   529 NVSSDGAEARRRLRECEGLVDALLHALQSAVGRKDTDNKSVENCVCIMRNLSYHVHK-EVPGADR 592
            ||||.|..||..||.||.||:.||:.:::::.:.:..||:|||||||:|||||...: :.|..|:
  Fly   391 NVSSAGEHARGCLRNCEHLVECLLYVVRTSIEKNNIGNKTVENCVCILRNLSYRCQEVDDPNYDK 455

  Rat   593 YQEVEPG--IPGSAATSQRRRKDDASCFG-GKKAKGKKDAEADRNFD-TLDLPKRT----EAAKG 649
            :..:.|.  ||.|:      :.::..||| .||.|...:::|...:: :.|..|.:    :..||
  Fly   456 HPFITPERVIPSSS------KGENLGCFGTNKKKKEANNSDALNEYNISADYSKSSVTYNKLNKG 514

  Rat   650 FELLYQPEVVRLYLSLLTESRNFNTLEAAAGALQNLSAGNWMWATYIRATVRKERGLPVLVELLQ 714
            :|.|:|||||:.|||||....|..||||||||:|||||..|..:..||||||||:|||:|||||:
  Fly   515 YEQLWQPEVVQYYLSLLQSCSNPETLEAAAGAIQNLSACYWQPSIDIRATVRKEKGLPILVELLR 579

  Rat   715 SETDKVVRAVAIALRNLSLDQRNKDLIGSYAMTELVR-----NVRNAQAPAHPSAHLEEDTVVAV 774
            .|.|:||.|||.|||||::|||||:|||.|||.:||:     ||::.|       :..:||:.||
  Fly   580 MEVDRVVCAVATALRNLAIDQRNKELIGKYAMRDLVQKLPSGNVQHDQ-------NTSDDTITAV 637

  Rat   775 LNTIHEIVSDSLDNARSLLQARGVPALVALVASSQSVREA--KAASHVLQTVWSYKELRGALQRD 837
            |.||:|::..:.:.:||||.:.|:..|:.:....:.....  |.||.||.|:|.:.|||...:::
  Fly   638 LATINEVIKKNPEFSRSLLDSGGIDRLMNITKRKEKYTSCVLKFASQVLYTMWQHNELRDVYKKN 702

  Rat   838 GW-----TKAHFQSASTAKGPKGTPNSGGFDDSTLPLVDKNLDGEKSTTRDVIPMDTLGPDGYST 897
            ||     ...||.:.:|   |..:||:          |:..|:.         ||.:.|...|. 
  Fly   703 GWKEQDFVSKHFTAHNT---PPSSPNN----------VNNTLNR---------PMASQGRTRYE- 744

  Rat   898 VDRR-ERRTLGSDSIGDSS 915
             ||. :|.|....|..|||
  Fly   745 -DRTIQRGTSTLYSANDSS 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArvcfNP_001124485.1 ARM 356..474 CDD:237987 65/118 (55%)
HEAT_2 361..463 CDD:290374 53/102 (52%)
armadillo repeat 361..386 CDD:293788 14/24 (58%)
armadillo repeat 394..430 CDD:293788 19/35 (54%)
armadillo repeat 437..472 CDD:293788 18/34 (53%)
ARM 438..580 CDD:237987 70/147 (48%)
armadillo repeat 479..530 CDD:293788 22/56 (39%)
ARM 651..751 CDD:237987 67/99 (68%)
armadillo repeat 651..687 CDD:293788 24/35 (69%)
armadillo repeat 697..731 CDD:293788 25/33 (76%)
armadillo repeat 738..783 CDD:293788 20/49 (41%)
armadillo repeat 789..821 CDD:293788 9/33 (27%)
p120ctnNP_001036444.1 ARM 227..341 CDD:237987 61/113 (54%)
armadillo repeat 227..252 CDD:293788 14/24 (58%)
armadillo repeat 260..296 CDD:293788 19/35 (54%)
armadillo repeat 304..339 CDD:293788 18/34 (53%)
ARM 307..442 CDD:237987 70/145 (48%)
armadillo repeat 347..392 CDD:293788 21/55 (38%)
armadillo repeat 515..556 CDD:293788 26/40 (65%)
ARM 516..643 CDD:237987 78/133 (59%)
armadillo repeat 562..596 CDD:293788 25/33 (76%)
armadillo repeat 601..641 CDD:293788 19/46 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6212
eggNOG 1 0.900 - - E1_KOG1048
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 406 1.000 Inparanoid score I1836
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125744at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45523
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10372
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X765
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.970

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