DRSC/TRiP Functional Genomics Resources

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Protein Alignment fzd2 and smo

DIOPT Version :9

Sequence 1:NP_571215.1 Gene:fzd2 / 30370 ZFINID:ZDB-GENE-990415-224 Length:550 Species:Danio rerio
Sequence 2:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster


Alignment Length:516 Identity:130/516 - (25%)
Similarity:228/516 - (44%) Gaps:95/516 - (18%)


- Green bases have known domain annotations that are detailed below.


Zfish    59 NLVGHYNQEDAGLEVHQFYPLVKV-QCSPELKFFLCSMYAPVCTVL---EKAIPPCRSICERAKQ 119
            :|...:.:::...:::.:|.|..| :|...::.|||:::.|.|..:   :....|...:|....:
  Fly   113 DLTDFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITME 177

Zfish   120 GCEVLMNKFGFQWPEALRCEH--FPVLGDGHICVGQNDSMATVSPVHMPIPGTPSVQLYSTPDKP 182
            .|.:|.|...|  |:.|||..  ||             :..|.....|...||.           
  Fly   178 PCRILYNTTFF--PKFLRCNETLFP-------------TKCTNGARGMKFNGTG----------- 216

Zfish   183 FRCPSTLKVPAYLSYKFL-GEPDCGAPCESSRTHRAYMFFTDQEIEFARIWILI-WS-SLCCAST 244
             :|.|.| ||...|..:. |...||..|:..       .:||.  |..:|..|| |: |:|..|.
  Fly   217 -QCLSPL-VPTDTSASYYPGIEGCGVRCKDP-------LYTDD--EHRQIHKLIGWAGSICLLSN 270

Zfish   245 LFTVTTYIVDMQRF-KYPERPIIFLSGCYTMVSIAYIAGYFLGDK--VVCNESFFPDSYKTIVQG 306
            ||.|:|:.:|.:.. |||...:.:::.|:.:..:.::..:..|.:  :||.:           .|
  Fly   271 LFVVSTFFIDWKNANKYPAVIVFYINLCFLIACVGWLLQFTSGSREDIVCRK-----------DG 324

Zfish   307 TKKE---------GCTILFMMLYFFSMASSIWWVILSLTWFLAAGMKWGH--EAIEANSQYFHLA 360
            |.:.         .|.::|:::|:|..|..:|:|.|:..|...|   .||  :.|:....||||.
  Fly   325 TLRHSEPTAGENLSCIVIFVLVYYFLTAGMVWFVFLTYAWHWRA---MGHVQDRIDKKGSYFHLV 386

Zfish   361 AWAVPAVKTISILAMGQIDGDVLSGVCFVGLNNSDALRGFILAPLFLYLFIGTSFLLAGFVSLFR 425
            ||::|.|.||:.:|..::||:.:.|:||||..|.....|.:|.||...:.||..|:..|.|.||.
  Fly   387 AWSLPLVLTITTMAFSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILIGGYFITRGMVMLFG 451

Zfish   426 IRTIMKH------DGTKTEKLERLMVRIGVFSVLYTVPATIVIACFFYEQAFRQQWEKSWIS-MN 483
                :||      ..:.:.|:..:::|:||.::|..|...:.|||...|.....:|.:|:.. :.
  Fly   452 ----LKHFANDIKSTSASNKIHLIIMRMGVCALLTLVFILVAIACHVTEFRHADEWAQSFRQFII 512

Zfish   484 CKSLAI-----PCPMQPAPHMTPDFTVFMIKYLMTLIVGITSGFWIWSGKTLHSWQKFYVR 539
            ||..::     .|.::..|.:    .|..:..|.....||....|.|:..::.:|:: |:|
  Fly   513 CKISSVFEEKSSCRIENRPSV----GVLQLHLLCLFSSGIVMSTWCWTPSSIETWKR-YIR 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fzd2NP_571215.1 CRD_FZ1_like 37..154 CDD:143567 22/100 (22%)
7tmF_FZD2 219..548 CDD:320373 94/349 (27%)
TM helix 1 228..253 CDD:320373 11/26 (42%)
TM helix 2 262..283 CDD:320373 1/20 (5%)
TM helix 3 313..339 CDD:320373 8/25 (32%)
TM helix 4 356..372 CDD:320373 10/15 (67%)
TM helix 5 394..423 CDD:320373 9/28 (32%)
TM helix 6 443..470 CDD:320373 9/26 (35%)
TM helix 7 499..524 CDD:320373 4/24 (17%)
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 27/134 (20%)
Frizzled 246..568 CDD:279827 93/346 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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