DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxd3a and ftz

DIOPT Version :9

Sequence 1:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio
Sequence 2:NP_477498.1 Gene:ftz / 40834 FlyBaseID:FBgn0001077 Length:410 Species:Drosophila melanogaster


Alignment Length:403 Identity:112/403 - (27%)
Similarity:158/403 - (39%) Gaps:141/403 - (34%)


- Green bases have known domain annotations that are detailed below.


Zfish     5 TYYDNAGLFGGYSYPKSDSYT-YGPTHQGFSSSSIENDYQSPIC-----PIQ-TTSVRQATHKNG 62
            |||||:|  ....|..:.:|. |.| .:.:|.|....:.|..:.     |:| ||...:||.:..
  Fly    30 TYYDNSG--SNAYYQNTSNYQGYYP-QESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKA 91

Zfish    63 DINGSCM------RPSASQG---------NSQPE---SISEQQQAAPLAA----SSPSPS----- 100
            :.:.:.:      |||..:.         ...|:   :..||.:.||..:    :||:||     
  Fly    92 EDDAASIIAAVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAPSYDQEY 156

Zfish   101 --------------------TNSTQKKK--------------------------SPSSNGSSTAT 119
                                .:.|||.|                          ||....||..:
  Fly   157 VTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLPPLEGISTPPQSPGEKSSSAVS 221

Zfish   120 PVISKQI---------FPW--MKETRQNAKQKSTNCPAAGETCDDKSPPGPASKRVRTAYTSAQL 173
            ..|:.:|         |.|  ::||             ....|.|       |||.|..||..|.
  Fly   222 QEINHRIVTAPNGAGDFNWSHIEET-------------LASDCKD-------SKRTRQTYTRYQT 266

Zfish   174 VELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIMHSPLGHSPDRSP 238
            :|||||||||||:.|.||:::||.|:|:||||||||||||||.|||:            :.|.||
  Fly   267 LELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKKDR------------TLDSSP 319

Zfish   239 PLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAKPQQNIY-GLAAYTA---------PLGGCIPQQK 293
            ...|:   ||:..||.:.:.|......||...|..:.: ..|||.|         .|....|||:
  Fly   320 EHCGA---GYTAMLPPLEATSTATTGAPSVPVPMYHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQ 381

Zfish   294 RYPGTEYDHHSMQ 306
            .:  .:||.:..|
  Fly   382 TH--QQYDAYPQQ 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 42/235 (18%)
Abdominal-A 116..237 CDD:332641 52/131 (40%)
Antp-type hexapeptide 126..131 3/15 (20%)
Homeobox 165..217 CDD:306543 36/51 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 5/26 (19%)
DUF4074 333..394 CDD:315871
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
ftzNP_477498.1 FTZ 1..248 CDD:281812 45/233 (19%)
Homeobox 257..310 CDD:278475 36/52 (69%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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