DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxd3a and unpg

DIOPT Version :9

Sequence 1:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:294 Identity:75/294 - (25%)
Similarity:104/294 - (35%) Gaps:90/294 - (30%)


- Green bases have known domain annotations that are detailed below.


Zfish    28 PTHQGFSSSSIENDYQSPICPIQTTSVRQATHKNGDINGSC------MRPSASQG---------- 76
            ||.....||..::...||:.|.....:.:....:||   ||      |.|....|          
  Fly   219 PTPPQAHSSPAKSGSHSPMEPALDVGMDEDFECSGD---SCSDISLTMSPRNYNGEMDKSRNGAY 280

Zfish    77 -NSQPESISEQQQAAPLAASSPSPSTNSTQKKKSPSSNGSSTATPVISKQIFPWMKETRQNAKQK 140
             ||..|..|:.:.|       .|.........|....||||:                  |:|  
  Fly   281 TNSDSEDCSDDEGA-------QSRHEGGGMGGKDSQGNGSSS------------------NSK-- 318

Zfish   141 STNCPAAGETCDDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQI 205
                                |:|.|||:||.||:|||:|||..:||....|.::|..|.|:|.|:
  Fly   319 --------------------SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQV 363

Zfish   206 KIWFQNRRMKYKKDQKSKGIMHSPLGHSPDRSPPLSGS----------NHIGYSGQLPNVNSLSY 260
            ||||||||.|:|:  ...|:....||    |:...||:          |......|...:..:..
  Fly   364 KIWFQNRRAKWKR--VKAGLTSHGLG----RNGTTSGTKIVVPIPVHVNRFAVRSQHQQLEKMCL 422

Zfish   261 DAPSPPSFAKPQ-------QNIYGLAAYTAPLGG 287
            ..|.|....|..       :...|....::|.||
  Fly   423 SGPKPDLRKKLSAEAIGGFEKFSGSTNASSPSGG 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 28/151 (19%)
Abdominal-A 116..237 CDD:332641 39/120 (33%)
Antp-type hexapeptide 126..131 0/4 (0%)
Homeobox 165..217 CDD:306543 30/51 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 7/36 (19%)
DUF4074 333..394 CDD:315871
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
unpgNP_477146.1 Homeobox 324..375 CDD:278475 29/50 (58%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

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