Sequence 1: | XP_006247152.1 | Gene: | Rnf43 / 303412 | RGDID: | 1305204 | Length: | 802 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_499473.2 | Gene: | plr-1 / 176575 | WormBaseID: | WBGene00023404 | Length: | 487 | Species: | Caenorhabditis elegans |
Alignment Length: | 559 | Identity: | 132/559 - (23%) |
---|---|---|---|
Similarity: | 205/559 - (36%) | Gaps: | 169/559 - (30%) |
- Green bases have known domain annotations that are detailed below.
Rat 6 QLQLAVLWPWLLMAT--LHA--GFGHTGL-------------VLAAAVESERSAEQKAIIRVIPL 53
Rat 54 KMDPTGKLNLTLEGVFAGVAEVSPAEGKLMQSHPLYLCNASDD--DNLEPGFISIVKLESPRRAP 116
Rat 117 RPCLSLASKARMAGERGASAVLFDITEDRSAAEQLQQPL---GLTKPVVLIWGSDAEKL------ 172
Rat 173 -----------MEFVYKNRKAYVWIELKEPPAWANYDVWILLTVVGTVFVII----LASVLRIRC 222
Rat 223 RPHPSRPDPLQQRTARAISQLATRRYQ------------ASCRRARAEWPDSGSSSSSAPV---- 271
Rat 272 ----------------CAICLEEFTEGQELRVISCLHEFHRTCVDPWLHQHRTCPLCMFNIVEGD 320
Rat 321 SFSQALGASPSYQEPGRRLHLIRQHPGHAHYHLPSA----YLLGPSRNSVAQTPRPRPF--LPSQ 379
Rat 380 EPSMGSRHQRLPRASHLRAPEEQQHLAVSPGHPYAQGWGPNRLRCTSQHPNACPVALR-RARPHE 443
Rat 444 ---SSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDS 479 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rnf43 | XP_006247152.1 | ZNRF_3_ecto | 85..187 | CDD:408039 | 23/123 (19%) |
RING-H2_RNF43 | 270..316 | CDD:319712 | 29/65 (45%) | ||
dnaA | 598..>743 | CDD:237605 | |||
plr-1 | NP_499473.2 | zf-rbx1 | 305..358 | CDD:289448 | 27/52 (52%) |
zf-RING_2 | 317..357 | CDD:290367 | 26/39 (67%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 68 | 1.000 | Domainoid score | I6857 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D138786at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | oto27722 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_118517 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X4852 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
8 | 7.780 |