DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rnf43 and plr-1

DIOPT Version :9

Sequence 1:XP_006247152.1 Gene:Rnf43 / 303412 RGDID:1305204 Length:802 Species:Rattus norvegicus
Sequence 2:NP_499473.2 Gene:plr-1 / 176575 WormBaseID:WBGene00023404 Length:487 Species:Caenorhabditis elegans


Alignment Length:559 Identity:132/559 - (23%)
Similarity:205/559 - (36%) Gaps:169/559 - (30%)


- Green bases have known domain annotations that are detailed below.


  Rat     6 QLQLAVLWPWLLMAT--LHA--GFGHTGL-------------VLAAAVESERSAEQKAIIRVIPL 53
            :|.|.:|....|::|  :||  ...||.|             |....:..:|:.::|.|      
 Worm     2 RLLLFILLNTTLLSTNYVHARPSVSHTTLASQFKFAEKADIFVTHTNINEDRTQDEKTI------ 60

  Rat    54 KMDPTGKLNLTLEGVFAGVAEVSPAEGKLMQSHPLYLCNASDD--DNLEPGFISIVKLESPRRAP 116
                      .|.|.|:.|.......|.::|......|:|...  ||.....:.:|..:...:..
 Worm    61 ----------KLSGTFSPVGSNYETGGDIVQVSSFRACDARRKGLDNTVFEHVPVVFYDDVEKFL 115

  Rat   117 RPCLSLASKARMAGERGASAVLFDITEDRSAAEQLQQPL---GLTKPVVLIWGSDAEKL------ 172
            ..|::|.::||.|.:.||.|:   |....|..|:..:|:   |...||:::.....|:|      
 Worm   116 TGCVALDNQARFAEKSGAMAL---IVGPASRVERTTRPMMIGGSKIPVIVLDDEQTERLRSELRS 177

  Rat   173 -----------MEFVYKNRKAYVWIELKEPPAWANYDVWILLTVVGTVFVII----LASVLRIRC 222
                       :.|:.:.....:.:::..|..       :.:|::|.:.::|    |..|::|||
 Worm   178 ASERGAVTKLRISFIDEKPTKVLKLQVFRPTV-------LNITLLGLLIILIVFVSLLVVVKIRC 235

  Rat   223 RPHPSRPDPLQQRTARAISQLATRRYQ------------ASCRRARAEWPDSGSSSSSAPV---- 271
            :|...|...|:.....|::::..|.:|            .|...||.:...|.||..|:.:    
 Worm   236 QPTMHRELWLRALARTALTKMEIRSFQKEKNVEAGQKKKTSSTFARLKQHRSSSSRHSSYLAVFG 300

  Rat   272 ----------------CAICLEEFTEGQELRVISCLHEFHRTCVDPWLHQHRTCPLCMFNIVEGD 320
                            |.|||||:.||.||||:.|.||||..||||||...|.||||.|::|   
 Worm   301 SLTSVAQSSSHSAQERCVICLEEYEEGTELRVLFCGHEFHPKCVDPWLLSKRRCPLCQFDVV--- 362

  Rat   321 SFSQALGASPSYQEPGRRLHLIRQHPGHAHYHLPSA----YLLGPSRNSVAQTPRPRPF--LPSQ 379
                                         :.|.|..    .|.|.|.::.:..||..|.  |||.
 Worm   363 -----------------------------YKHYPKVDSPEKLSGRSDDTTSLLPRTSPSEDLPSA 398

  Rat   380 EPSMGSRHQRLPRASHLRAPEEQQHLAVSPGHPYAQGWGPNRLRCTSQHPNACPVALR-RARPHE 443
            ..|..:|..|..|.:|        ||..|...|           .:.|.|:..|.|.| |:.|..
 Worm   399 PSSRSTRLTRPYRTTH--------HLIPSSTRP-----------SSHQRPSLQPTAPRTRSCPRR 444

  Rat   444 ---SSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDS 479
               .|.:...:.....||     :||.||.  |...|.|
 Worm   445 RQLRSRNQIDFSIRIGGY-----SSDVSSS--HAEQSRS 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rnf43XP_006247152.1 ZNRF_3_ecto 85..187 CDD:408039 23/123 (19%)
RING-H2_RNF43 270..316 CDD:319712 29/65 (45%)
dnaA 598..>743 CDD:237605
plr-1NP_499473.2 zf-rbx1 305..358 CDD:289448 27/52 (52%)
zf-RING_2 317..357 CDD:290367 26/39 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I6857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138786at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto27722
orthoMCL 1 0.900 - - OOG6_118517
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4852
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
87.780

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