DRSC/TRiP Functional Genomics Resources

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Protein Alignment pou6f1 and pdm2

DIOPT Version :10

Sequence 1:NP_571188.1 Gene:pou6f1 / 30334 ZFINID:ZDB-GENE-980526-530 Length:610 Species:Danio rerio
Sequence 2:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster


Alignment Length:511 Identity:130/511 - (25%)
Similarity:194/511 - (37%) Gaps:141/511 - (27%)


- Green bases have known domain annotations that are detailed below.


Zfish   187 LAAASPAGGLLKLPFAGLQAATVLNSVQTQLQAPAQAVLQPQMSALQAMQQTQTTAATTASIVQK 251
            |..|.|..|...||              |..|.|...||.|..::.             ::||..
  Fly   384 LHIAPPRAGPTPLP--------------THQQPPVGEVLPPNSTSF-------------STIVDP 421

Zfish   252 ASEPSV-----------------------------SVATLQTAGLSINPAIISAASLGAQPQFIS 287
            ..|||:                             .:.:|...|.|.....:........||.:|
  Fly   422 PKEPSIYEQPAPNGRHCRPANKVMRHMSNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLS 486

Zfish   288 SLTTTPIITSAMSN----VAGLTSQLITNAQGQVIGTLPLLVNPASLAGAAAASALPAQGLQVQ- 347
            |......:.|.:.|    :|....:|....:.:.:.:    |||..  ..|.|.....|.||:| 
  Fly   487 SKRQARELDSELENEVLDLAPPPKRLAEEQEEEKVAS----VNPPQ--PVAFAPEEMHQALQLQL 545

Zfish   348 ------------------TVAPQLLLNSQGQIIATIG-----------------NGPTAAIP--- 374
                              .:|.|.||.:..|.:|...                 :.|.|..|   
  Fly   546 HSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLAKSPLRS 610

Zfish   375 STASVLPK------ATVPLTLTKTTTQGPVGKVAPSKVIIAPQP----SVVKPVTSLTAAGVIAC 429
            .:.|.:|:      .|.|.::|..:.......:.|:...:..||    |..||.:.||.|..:| 
  Fly   611 PSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQQQPQLQQSTPKPTSGLTVASAMA- 674

Zfish   430 GEMPTVGQLVNKPSAVKDEEAINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAI 494
                   :|...|     ||..:|||:.:|||.||.||:.||.||..||.|:....|..:||:.|
  Fly   675 -------KLEQSP-----EETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI 727

Zfish   495 CRFEKLDITPKSAQKLKPVLERWLAEAELWNQKGQ------QNLMEFVGGEP----SKKRKRRTS 549
            .|||.|:::.|:..||||:|::||.:|:....|..      ..:...:...|    .::||:|||
  Fly   728 SRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTS 792

Zfish   550 FTPQAIEVLNTYFEKNSLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKIN 605
            ........|...|..|..||.:||:::::.||.|:||:|||||||||..|   :||
  Fly   793 IETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEK---RIN 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou6f1NP_571188.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 55..87
POU 448..522 CDD:197673 35/73 (48%)
Homeodomain 544..600 CDD:459649 26/55 (47%)
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 61/331 (18%)
POU 691..755 CDD:197673 30/63 (48%)
Homeodomain 787..843 CDD:459649 27/58 (47%)
Blue background indicates that the domain is not in the aligned region.

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