DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hoxd4a and zen2

DIOPT Version :9

Sequence 1:NP_001119917.1 Gene:hoxd4a / 30329 ZFINID:ZDB-GENE-980526-214 Length:256 Species:Danio rerio
Sequence 2:NP_476794.1 Gene:zen2 / 40827 FlyBaseID:FBgn0004054 Length:252 Species:Drosophila melanogaster


Alignment Length:114 Identity:51/114 - (44%)
Similarity:70/114 - (61%) Gaps:10/114 - (8%)


- Green bases have known domain annotations that are detailed below.


Zfish   144 VVYPWMK-KVHVTTVNPDYTGPEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSE 207
            ::||.:: .|.........:..:.||||||::..|::|||:|||.|:||.|.|||||:..|.|:|
  Fly    20 MMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTE 84

Zfish   208 RQIKIWFQNRRMKWKKDHKLPNTKG------RSASVGNQHAQHAQKDSQ 250
            ||:||||||||||.||.   .|.||      .|..:.:|.::..|||.|
  Fly    85 RQVKIWFQNRRMKLKKS---TNRKGAIGALTTSIPLSSQSSEDLQKDDQ 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxd4aNP_001119917.1 Homeobox 169..222 CDD:278475 35/52 (67%)
zen2NP_476794.1 Homeobox 46..99 CDD:278475 35/52 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.810

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