DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxa2b and unpg

DIOPT Version :10

Sequence 1:NP_571181.1 Gene:hoxa2b / 30325 ZFINID:ZDB-GENE-990415-98 Length:363 Species:Danio rerio
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:205 Identity:62/205 - (30%)
Similarity:90/205 - (43%) Gaps:40/205 - (19%)


- Green bases have known domain annotations that are detailed below.


Zfish    14 SQPSLAECLTSFPPVGDAFQSSSIKSSTLSHSTLIPPPFEQTIPSLNPGSHPRHSRPKQNPNGSC 78
            :.|.:|:.....||     |:.|..:.:.|||     |.|   |:|:.|.    ....:....||
  Fly   209 ANPGMAQLQEPTPP-----QAHSSPAKSGSHS-----PME---PALDVGM----DEDFECSGDSC 256

Zfish    79 -PLPAASLPPEYPWMKEKKASKKNQTTSTAATTDPGPLYFSPQGSPEISDGG------------- 129
             .:.....|..|....:|..:.....:.:...:|       .:|:....:||             
  Fly   257 SDISLTMSPRNYNGEMDKSRNGAYTNSDSEDCSD-------DEGAQSRHEGGGMGGKDSQGNGSS 314

Zfish   130 -SGATRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 193
             :..:||.|||:|:.||||||:|||..|||....|.:||..|.|:|.|||:||||||.|.|| .:
  Fly   315 SNSKSRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKR-VK 378

Zfish   194 CKENHHGDGK 203
            .....||.|:
  Fly   379 AGLTSHGLGR 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxa2bNP_571181.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..132 17/104 (16%)
Antp-type hexapeptide 88..93 1/4 (25%)
Homeodomain 134..190 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..218 6/18 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 245..279
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 31/51 (61%)
Blue background indicates that the domain is not in the aligned region.

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