DRSC/TRiP Functional Genomics Resources

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Protein Alignment pou3f3b and Antp

DIOPT Version :9

Sequence 1:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:400 Identity:80/400 - (20%)
Similarity:119/400 - (29%) Gaps:161/400 - (40%)


- Green bases have known domain annotations that are detailed below.


Zfish    66 NGGHMLSHAHQWVTSLPHAAAAAAAAAVAAAEAGSPWSSSPVGMTGSPQQQD------VKNNSGR 124
            ||..|.......|.|.|.:.::.....:..|:..        |..|.||||.      .:|...:
  Fly    70 NGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTN--------GQLGVPQQQQQQQQQPSQNQQQQ 126

Zfish   125 DDLHSGTALHHRAPHLGPHQTHAGAWGSTTAAHIPSLTGSQQQQQSLIYSQ------PGGFTVNG 183
            ....:...|..:.|.:....||.                .|||||.::|:.      .||.   |
  Fly   127 QAQQAPQQLQQQLPQVTQQVTHP----------------QQQQQQPVVYASCKLQAAVGGL---G 172

Zfish   184 MLSPPGSQSLV-------------------HPGLVRG--DTPELDHSSHHHHHHHQHQHHQQA-- 225
            |:...||..||                   ||....|  |....|.:..|.:||:...:.||:  
  Fly   173 MVPEGGSPPLVDQMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVPDVTEVHQNHHNMGMYQQQSGV 237

Zfish   226 -----------HHG---VNSHDPHSDEDTPTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYG 276
                       |.|   ...|..|..:.||.|.                                
  Fly   238 PPVGAPPQGMMHQGQGPPQMHQGHPGQHTPPSQ-------------------------------- 270

Zfish   277 NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSTGSPTSIDKIAAQGRKRKKRT-----S 336
            |..||::               .:...|..|:.   |..|.        .|.|||.::|     :
  Fly   271 NPNSQSS---------------GMPSPLYPWMR---SQFGK--------CQERKRGRQTYTRYQT 309

Zfish   337 IEVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKR-------------- 387
            :|:.    .|.||.:  ..:.:....:|..|.|.:..:::||.|||.|.|:              
  Fly   310 LELE----KEFHFNR--YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEPGSGGEG 368

Zfish   388 --MTPPGVPQ 395
              :|||..||
  Fly   369 DEITPPNSPQ 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 11/55 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 22/98 (22%)
POU 238..312 CDD:197673 8/73 (11%)
Homeobox 333..386 CDD:278475 14/57 (25%)
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 37/205 (18%)
Homeobox 301..354 CDD:395001 14/58 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

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