DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pou3f3b and nub

DIOPT Version :9

Sequence 1:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio
Sequence 2:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster


Alignment Length:482 Identity:173/482 - (35%)
Similarity:215/482 - (44%) Gaps:141/482 - (29%)


- Green bases have known domain annotations that are detailed below.


Zfish    16 LSSGSIVHSDSGGGMQQGSAAVTSVSGGYRGDPTVKMVQSDFMQGAMAASNGGHMLSHAHQWVTS 80
            |:|.:..||.........||..:.|.......|...|:..     .:|.|..|          ::
  Fly   496 LTSDNSRHSTQSPSNSVKSATASPVPVISVPSPVPPMISP-----VLAPSGCG----------ST 545

Zfish    81 LPHA-AAAAAAAAVAAAEAGS--------PWSSSP--------VGM-----TGSPQQQDVKN--- 120
            .|:: ||||||||..|:..||        |..|||        :||     |||...||...   
  Fly   546 TPNSMAAAAAAAAAVASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTGSLSPQDFAQFHQ 610

Zfish   121 -------------NSGRDDLHSGTALHHRAPHLGPHQTHAGAWGSTTAA------HIPSLTGSQQ 166
                         ||..:.|.||:        ||..|..........||      .:.:|:.:.|
  Fly   611 LLQQRQVALTQQFNSYMELLRSGS--------LGLAQDDPALTAQVAAAQFLMQSQLQALSQASQ 667

Zfish   167 QQQSL-----------------IYSQPGGFTVNGMLSPPGSQSLVHPGLVRGDTPELDHSSHHHH 214
            |.|:|                 :..||...|.:.:.||...:|           |.......|||
  Fly   668 QLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRS-----------PASSPQQLHHH 721

Zfish   215 HHHQHQ----------------------HHQQAHHGVNSHDPH--------------SDEDTPTS 243
            |||..|                      ...|...|..:..|.              |.|:|...
  Fly   722 HHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEPSPEETTDL 786

Zfish   244 DDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWL 308
            ::||.|||.||||||||||||.|||||:|.||||.||||||.|||||.|||||||||||||.|||
  Fly   787 EELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWL 851

Zfish   309 EEAD---SSTG---SPTSIDKIAAQ----GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSL 363
            ::||   .:||   .|.::....:.    ||:||||||||.:::||||..||...||:::|||.|
  Fly   852 DDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTSEEITQL 916

Zfish   364 ADNLQLEKEVVRVWFCNRRQKEKRMTP 390
            ||.|.:||||||||||||||||||:.|
  Fly   917 ADRLSMEKEVVRVWFCNRRQKEKRINP 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 20/86 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 17/97 (18%)
POU 238..312 CDD:197673 56/73 (77%)
Homeobox 333..386 CDD:278475 36/52 (69%)
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 52/63 (83%)
Homeobox 886..939 CDD:278475 36/52 (69%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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