DRSC/TRiP Functional Genomics Resources

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Protein Alignment hoxb5a and Ubx

DIOPT Version :9

Sequence 1:NP_571176.2 Gene:hoxb5a / 30317 ZFINID:ZDB-GENE-980526-70 Length:275 Species:Danio rerio
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:316 Identity:99/316 - (31%)
Similarity:130/316 - (41%) Gaps:95/316 - (30%)


- Green bases have known domain annotations that are detailed below.


Zfish    28 SSAMNASYRD---SGTMHSGSYGYNYNGMDLSVNRSTSTGHFGAVGD-------NSRVFQSPAPE 82
            :.|:| .|:|   :|..:.|..|....|       ....|..|..|:       |:....:||..
  Fly    94 ADAVN-GYKDIWNTGGSNGGGGGGGGGG-------GGGAGGTGGAGNANGGNAANANGQNNPAGG 150

Zfish    83 TRFRQPSSCSLASPEPLPCSN-SESLGPKGSSPPSDQSTTTAGN------NLNS----------- 129
            ...| ||:|:       |.|. ...|...|.||.|.:..:..||      |.|:           
  Fly   151 MPVR-PSACT-------PDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQSGVGVAG 207

Zfish   130 -----NTHFTEIDEASASSETEEASHRANN-----------SAPRTQQKQET---------TATS 169
                 |.:.| |..|:|.:....:.|:|:|           ..|....|.:.         .:|.
  Fly   208 AGTAWNANCT-ISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTD 271

Zfish   170 TTSATSDGQAPQIFPWMRKLHISHDMTGPDG--KRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 232
            .....|:..|..:.|         |..|.:|  :|.|..||||||||||||||.|.|||||||||
  Fly   272 MGKRYSESLAGSLLP---------DWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIE 327

Zfish   233 IAHALCLSERQIKIWFQNRRMKWKKD--------------NKLKSMSLATAGSAFQ 274
            :||||||:||||||||||||||.||:              ...|:.:.|.|.:|.|
  Fly   328 MAHALCLTERQIKIWFQNRRMKLKKEIQAIKELNEQEKQAQAQKAAAAAAAAAAVQ 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hoxb5aNP_571176.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..181 32/160 (20%)
Antp-type hexapeptide 182..187 1/4 (25%)
Homeobox 204..256 CDD:278475 45/51 (88%)
UbxNP_536752.1 Homeobox 299..352 CDD:395001 45/52 (87%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45659
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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