DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2ab3 and His2A:CG33829

DIOPT Version :9

Sequence 1:NP_001100439.1 Gene:H2ab3 / 302783 RGDID:1561666 Length:116 Species:Rattus norvegicus
Sequence 2:NP_001027326.1 Gene:His2A:CG33829 / 3772447 FlyBaseID:FBgn0053829 Length:124 Species:Drosophila melanogaster


Alignment Length:101 Identity:37/101 - (36%)
Similarity:64/101 - (63%) Gaps:2/101 - (1%)


- Green bases have known domain annotations that are detailed below.


  Rat    10 RGSSSRRRRRSRTSRAELIFAVSLVEQHLREGGHARRRLSETVPIFLAAILEFLTRRLLELAGNE 74
            :|...:.:.:||::||.|.|.|..:.:.||:|.:| .|:....|::|||::|:|...:|||||| 
  Fly     6 KGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGN- 68

  Rat    75 AQRRGTQSRITPELLDLAVYSNTLLSELFQFITISR 110
            |.|...::||.|..|.||:.::..|::|...:||::
  Fly    69 AARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQ 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2ab3NP_001100439.1 H2A 25..116 CDD:305064 33/86 (38%)
His2A:CG33829NP_001027326.1 PTZ00017 16..124 CDD:185399 36/91 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5262
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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