DRSC/TRiP Functional Genomics Resources

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Protein Alignment inhbb and scw

DIOPT Version :9

Sequence 1:NP_571143.2 Gene:inhbb / 30275 ZFINID:ZDB-GENE-990415-2 Length:393 Species:Danio rerio
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:361 Identity:85/361 - (23%)
Similarity:133/361 - (36%) Gaps:96/361 - (26%)


- Green bases have known domain annotations that are detailed below.


Zfish   109 PNLDGHAA------HNEVQE--ETSEII----SFAESDDVTPSKSSLYFLISNEGNQNLYVLQAN 161
            |||...|:      :||:.|  |..|::    ..:..||:         |||||..|.:....:.
  Fly    58 PNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDI---------LISNEDRQEIASCNSI 113

Zfish   162 LWLYFKLMPGTLEKGL---------------------------------RRKVTVRVHSYEPGGQ 193
            |....:|.|..|:..|                                 |...||.|:......|
  Fly   114 LTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAMLRIYKQPSLVDRRANFTVSVYRKLDNRQ 178

Zfish   194 NVHWPMM-EKRVELKRSGWHTFPVSEAIREMLAKGG--RRQDLDIHCEGCEAANVLPILVDP--S 253
            :..:.:: .......:.||..|.:::.:|..|...|  ||.:|.|.....:.:.....||.|  |
  Fly   179 DFSYRILGSVNTTSSQRGWLEFNLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQAS 243

Zfish   254 DPSHRPFLV---------VRAQQADGKHRIR-KRGLECDGNNGG-----------------LCCR 291
            ..|..||:|         |:.|      ::| ||.||.....||                 .|.|
  Fly   244 RTSLEPFIVGY
FNGPELLVKIQ------KLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCER 302

Zfish   292 QQFYIDFRLIGWNDWIIAPAGYYGNYCEGSCPAYMAGVPGSASSFHTAVVNQYRMRGMSPGSVNS 356
            ..|.:||:.:..::|:|||..:...:|.|.| .:..|...:|:: |..|  |..|....|.....
  Fly   303 LNFTVDFKELHMHNWVIAPKKFEAYFCGGGC-NFPLGTKMNATN-HAIV--QTLMHLKQPHLPKP 363

Zfish   357 CCIPTKLSTMSMLYFDDEYNIVKRDVPNMIVEECGC 392
            ||:||.|..:::|.:.:|..|........:.:||||
  Fly   364 CCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
inhbbNP_571143.2 TGFb_propeptide 54..263 CDD:279078 45/212 (21%)
TGFB 289..392 CDD:214556 29/102 (28%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 45/204 (22%)
TGFB 300..400 CDD:214556 31/104 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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