DRSC/TRiP Functional Genomics Resources

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Protein Alignment snai1a and esg

DIOPT Version :9

Sequence 1:NP_001300628.1 Gene:snai1a / 30273 ZFINID:ZDB-GENE-990415-255 Length:260 Species:Danio rerio
Sequence 2:NP_476600.1 Gene:esg / 34903 FlyBaseID:FBgn0001981 Length:470 Species:Drosophila melanogaster


Alignment Length:250 Identity:113/250 - (45%)
Similarity:145/250 - (57%) Gaps:28/250 - (11%)


- Green bases have known domain annotations that are detailed below.


Zfish    16 PNYSELECQNDTSPDRYPLAELPAVSND--FPVTCLTTGLVWDVSLLPSLHNSPSPSTLSTNQGP 78
            |.|..|.....|.....|::  ||.|.:  :.:..:|.         .|..:|..|..||.....
  Fly   215 PGYPSLGGYTHTHHHHAPIS--PAYSENSYYSMRSMTP---------ESSCSSSLPEDLSLKHKN 268

Zfish    79 LDLSSPSSISCSSSGEEDEGRTSD------PPSPDSSDTYHPQQTSRP--RRSNKSRAG---QRE 132
            |:|    :::.|..||:...:|.|      |.:....|...|.:...|  ::|..:.:|   .::
  Fly   269 LNL----NLNTSQPGEQAAAKTGDMSPETMPNASAKKDKNQPPRYQCPDCQKSYSTFSGLTKHQQ 329

Zfish   133 DKSEAAVTAASRPAFFCKHCPKEYNSLGALKMHIRSHTLPCVCPTCGKAFSRPWLLRGHIRTHTG 197
            ....||.....:.:|.||.|.|.|.||||||||||:|||||.|..|||||||||||:||||||||
  Fly   330 FHCPAAEGNQVKKSFSCKDCDKTYVSLGALKMHIRTHTLPCKCNLCGKAFSRPWLLQGHIRTHTG 394

Zfish   198 ERPFSCPHCNRAFADRSNLRAHLQTHADVKKYQCSTCSRTFSRMSLLQKHSAAGC 252
            |:||||.||:||||||||||||||||:|:|||.|::||:||||||||.|||..||
  Fly   395 EKPFSCQHCHRAFADRSNLRAHLQTHSDIKKYSCTSCSKTFSRMSLLTKHSEGGC 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snai1aNP_001300628.1 C2H2 Zn finger 149..169 CDD:275368 15/19 (79%)
COG5048 <170..>244 CDD:227381 60/73 (82%)
zf-C2H2 173..195 CDD:278523 17/21 (81%)
C2H2 Zn finger 175..195 CDD:275368 16/19 (84%)
zf-H2C2_2 188..211 CDD:290200 18/22 (82%)
zf-C2H2 201..223 CDD:278523 19/21 (90%)
C2H2 Zn finger 203..223 CDD:275368 17/19 (89%)
C2H2 Zn finger 231..247 CDD:275368 11/15 (73%)
esgNP_476600.1 zf-C2H2 309..331 CDD:278523 3/21 (14%)
C2H2 Zn finger 311..331 CDD:275370 3/19 (16%)
zf-C2H2 344..366 CDD:278523 16/21 (76%)
C2H2 Zn finger 346..366 CDD:275368 15/19 (79%)
zf-C2H2 370..392 CDD:278523 17/21 (81%)
C2H2 Zn finger 372..392 CDD:275368 16/19 (84%)
zf-H2C2_2 385..408 CDD:290200 18/22 (82%)
zf-C2H2 398..420 CDD:278523 19/21 (90%)
C2H2 Zn finger 400..420 CDD:275368 17/19 (89%)
C2H2 Zn finger 428..444 CDD:275368 11/15 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2462
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6484
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X955
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.770

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