DRSC/TRiP Functional Genomics Resources

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Protein Alignment sema3ab and Sema2a

DIOPT Version :9

Sequence 1:NP_571136.1 Gene:sema3ab / 30267 ZFINID:ZDB-GENE-991209-6 Length:778 Species:Danio rerio
Sequence 2:NP_477507.1 Gene:Sema2a / 36846 FlyBaseID:FBgn0011260 Length:724 Species:Drosophila melanogaster


Alignment Length:729 Identity:220/729 - (30%)
Similarity:346/729 - (47%) Gaps:120/729 - (16%)


- Green bases have known domain annotations that are detailed below.


Zfish    58 YHTFLLDEERGRLFVGAKDHVLSFNLVDI---NMDQQLISWPSSPSRRD--ECKWAGKDVQKECA 117
            |.||.::|:|..|:|||.|.|...||.:|   |.::.:|:  ..|:|.|  .|...||....:|.
  Fly    68 YRTFHMNEDRDTLYVGAMDRVFRVNLQNISSSNCNRDVIN--LEPTRDDVVSCVSKGKSQIFDCK 130

Zfish   118 NFIKVLQPFNQ-THLYACGTGAFHP----VCAHVEVGKRSEDNTFRLGSSFENGRGKSPYDPKLQ 177
            |.::|:|..:| ..||.|||.|.:|    :.|::....|||   :.:|...  |..|.||||...
  Fly   131 NHVRVIQSMDQGDRLYVCGTNAHNPKDYVIYANLTHLPRSE---YVIGVGL--GIAKCPYDPLDN 190

Zfish   178 TASMLIDG-------ELYAGTSADFMGRDFAIFRT--------LGKHHPIRTEQHDSRWLNDPRF 227
            :.::.::.       .||:||:|:|...|..||||        ..::...||.::||:||:.|.|
  Fly   191 STAIYVENGNPGGLPGLYSGTNAEFTKADTVIFRTDLYNTSAKRLEYKFKRTLKYDSKWLDKPNF 255

Zfish   228 VSVHLIPESDNAEDDKIYLFFRENAIDGEQISKATHARIGQLCKNDFGGHRSLVNKWTTFLKARL 292
            |....|.|       .:|.||||.|::.....||.::||.::||.|.||...|.:.|.|:|||||
  Fly   256 VGSFDIGE-------YVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNLLAHNWATYLKARL 313

Zfish   293 VCSVPGLNGIDTHFDELQDVFLMSSKDPKNPIIYAVFTTSSNIFKGSAVCMYSMADIRRVFLGPY 357
            .||:.|  ....:|:|:|.|:.:.|...:   .:|.||||:|...|||||.:.:.:|:..|.|.:
  Fly   314 NCSISG--EFPFYFNEIQSVYQLPSDKSR---FFATFTTSTNGLIGSAVCSFHINEIQAAFNGKF 373

Zfish   358 AHRDGPNYQWVPFLN-RVPYPRPGTCPSKTFDGFESTKDFPDDVITFARSHPAMYNPVFPINNHP 421
            ..:...|..|:|.|| |||.||||||       ...|.:.||.|:.|.||||.|...|...:|:|
  Fly   374 KEQSSSNSAWLPVLNSRVPEPRPGTC-------VNDTSNLPDTVLNFIRSHPLMDKAVNHEHNNP 431

Zfish   422 IIIKTDVDYQFTQIVVD--RVEAEDGQYDVMFIGTDMGTVLKVVSIPRGTWHDLEEVLLEEMTVF 484
            :..|.|:  .||::|||  |::..:.:|.|.::||::|.:.|:|...|.     .|.|.:.:.:|
  Fly   432 VYYKRDL--VFTKLVVDKIRIDILNQEYIVYYVGTNLGRIYKIVQYYRN-----GESLSKLLDIF 489

Zfish   485 R-EPT-AITAMELSTKQQQLYLGSAIGVSQMPLHRCDVYGKACAECCLARDPYCAWD--GSQCSR 545
            . .|. ||..||:|..::.||:|:...:.|:.|..|:.....|..|  .|||||.||  .:.|..
  Fly   490 EVAPNEAIQVMEISQTRKSLYIGTDHRIKQIDLAMCNRRYDNCFRC--VRDPYCGWDKEANTCRP 552

Zfish   546 YFPTAKRRTRRQDIRNGDPLTQCSDLQHHDEADGEAGLLDKTVYGVENSSSFLECSPKSQRAL-- 608
            |     .....||:.|     :.||:       .::.:|.|.:......|..|.|..|....|  
  Fly   553 Y-----ELDLLQDVAN-----ETSDI-------CDSSVLKKKIVVTYGQSVHLGCFVKIPEVLKN 600

Zfish   609 --IYWQFQRHGED---HKLEIKSDERVLGTEQGLLIRSLHQKDSGVYYCHAVEHGFIQTLLRLTL 668
              :.|  ..|.:|   :::.....:.:..||:||::.|:::.|.|.|.||.  .|.:.....:|:
  Fly   601 EQVTW--YHHSKDKGRYEIRYSPTKYIETTERGLVVVSVNEADGGRYDCHL--GGSLLCSYNITV 661

Zfish   669 NVIPAEHLDDLLHRDPPDTNDPANGKM---WYRDFLSLINPPSPNSVDQLCEQVWKRERKQRRQK 730
            :.          ||..|........|:   |..:|...          :...:.|::::.|...:
  Fly   662 DA----------HRCTPPNKSNDYQKIYSDWCHEFEKY----------KTAMKSWEKKQAQCSTR 706

Zfish   731 ANLLHASQSHTSQI 744
            .|.  :|..|.::|
  Fly   707 QNF--SSNQHPNEI 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sema3abNP_571136.1 Sema 27..519 CDD:301699 169/490 (34%)
PSI 517..>553 CDD:214655 12/37 (32%)
Ig_Semaphorin_classIII 583..673 CDD:143279 22/96 (23%)
IG_like 586..654 CDD:214653 18/74 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 727..778 4/18 (22%)
Sema2aNP_477507.1 Sema_2A 66..523 CDD:200499 168/487 (34%)
Ig_Semaphorin_C 573..664 CDD:143180 22/104 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9670
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31358
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.920

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