DRSC/TRiP Functional Genomics Resources

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Protein Alignment sema3ab and Sema1a

DIOPT Version :9

Sequence 1:NP_571136.1 Gene:sema3ab / 30267 ZFINID:ZDB-GENE-991209-6 Length:778 Species:Danio rerio
Sequence 2:NP_001260265.1 Gene:Sema1a / 34192 FlyBaseID:FBgn0011259 Length:1131 Species:Drosophila melanogaster


Alignment Length:853 Identity:235/853 - (27%)
Similarity:375/853 - (43%) Gaps:179/853 - (20%)


- Green bases have known domain annotations that are detailed below.


Zfish     3 YLWWIVLLIWTLIAPERGTVAQRSKSNVPRLKPSYKEMLESNNLLTFNGLANSSAY-HTFLLDEE 66
            |.|..|.|:.|::.....:..|.:      ::|.....|...::|.|.|  |.|.. |..|:.::
  Fly    47 YGWMQVFLLLTVLVIGNQSAWQEN------IRPKLYVELGPEDVLKFVG--NESVVDHFKLVTKD 103

Zfish    67 RGRLFVGAKDHVLSFNLVDINMDQQLISWPSSPSRRDECKWAGKDVQKECANFIKVLQPFNQTHL 131
            ...|.:||::.|.:.::.|: ::||.:.|.|.......|...||| ::.|.|:|:::...:...|
  Fly   104 GNSLLIGARNTVFNLSIHDL-VEQQRLVWTSPEDDTKMCLVKGKD-EEACQNYIRIMVVPSPGRL 166

Zfish   132 YACGTGAFHPVCAHVEVGKRSEDNTFRLGSS------FENGRGKSPYDPKLQTASMLIDGELYAG 190
            :.|||.:|.|:|           ||:.:..|      .:||:...||||:..:.|:|.|.|||:|
  Fly   167 FVCGTNSFRPMC-----------NTYIISDSNYTLEATKNGQAVCPYDPRHNSTSVLADNELYSG 220

Zfish   191 TSADFMGRDFAIFRTLGKHHPIRTEQHDSRWLNDPRFVSVHLIPESDNAEDDKIYLFFRENAIDG 255
            |.|||.|.|..|:|     .|::|||:||..||.|.||       |...:.|.:|.||||.|::.
  Fly   221 TVADFSGSDPIIYR-----EPLQTEQYDSLSLNAPNFV-------SSFTQGDFVYFFFRETAVEF 273

Zfish   256 EQISKATHARIGQLCKNDFGGHRSLVNKWTTFLKARLVCSVPGLNGIDTHFDELQDVF------- 313
            ....||.::|:.::||.|.||.....|:||:|||:||.||:||  ....:|:|:|...       
  Fly   274 INCGKAIYSRVARVCKWDKGGPHRFRNRWTSFLKSRLNCSIPG--DYPFYFNEIQSASNLVEGQY 336

Zfish   314 -LMSSKDPKNPIIYAVFTTSSNIFKGSAVCMYSMADIRRVFLGPYAHRDGPNYQWVPFLN-RVPY 376
             .||||     :||.||.|.||...|||||.:::.||...|.|.:..:.|.|..|:|..| :||.
  Fly   337 GSMSSK-----LIYGVFNTPSNSIPGSAVCAFALQDIADTFEGQFKEQTGINSNWLPVNNAKVPD 396

Zfish   377 PRPGTCPSKTFDGFESTKDFPDDVITFARSHPAMYNPVFPINNHPIIIKTDVDYQFTQIVVD-RV 440
            ||||:|       ...::..||..:.|.::|..|...|....:.||:::|...|:||||.|| ::
  Fly   397 PRPGSC-------HNDSRALPDPTLNFIKTHSLMDENVPAFFSQPILVRTSTIYRFTQIAVDAQI 454

Zfish   441 EAEDGQ-YDVMFIGTDMGTVLKVVSIPRGTWHD-LEEVLLEEMTVFREPTAITAMELSTKQQ--- 500
            :...|: |||:|:|||.|.::|.|:.......| :..|::||:.|..:...|..:|:....|   
  Fly   455 KTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSEPIRNLEIVRTMQYDQ 519

Zfish   501 ---------QLYLGSAIGVSQMPLHRC--DVYGKACAECCLARDPYCAWD--GSQC--------- 543
                     :|.:.:...|..:.||||  |.. .:|:||...:|||||||  ..:|         
  Fly   520 PKDGSYDDGKLIIVTDSQVVAIQLHRCHNDKI-TSCSECVALQDPYCAWDKIAGKCRSHGAPRWL 583

Zfish   544 -SRYF------------PTAKRRTR----------RQDIRNGDPLTQCSDLQHHDEADGEAGLLD 585
             ..||            |:.|..::          |.|:...|...|..|.:..|.       :|
  Fly   584 EENYFYQNVATGQHAACPSGKINSKDANAGEQKGFRNDMDLLDSRRQSKDQEIIDN-------ID 641

Zfish   586 KTVYGVENSSSFLECSPKSQRALIYWQFQRHGEDHKLEIKSDERVLGTEQGLLI---------RS 641
            |...|.:.|:..:..                  .:.:|......:.|:...||:         |.
  Fly   642 KNFEGPQISADIINA------------------QYTVETLVMAVLAGSIFSLLVGFFTGYFCGRR 688

Zfish   642 LHQ-KDSGVYYCHAVEHGFIQTLLRLTLNVIPAEHLDDLLHRDP---PDTNDPANGKMWYRDFLS 702
            .|: :|..:.|.......|.|   |..:|..|:   ...:.::|   |...:     :.|.:.:.
  Fly   689 CHKDEDDNLPYPDTEYEYFEQ---RQNVNSFPS---SCRIQQEPKLLPQVEE-----VTYAEPVL 742

Zfish   703 LINPPSPNSVDQLCEQVWKRERKQRRQKANLLHASQSHTSQILHSSQSHAKWKLLQENKKGRNR- 766
            |..||.||.:         ...|...:|..:....|...|:.|...|...  ...|::.:||:. 
  Fly   743 LPQPPPPNKM---------HSPKNTLRKPPMHQMHQGPNSETLFQFQPDG--YNTQQSYRGRDNF 796

Zfish   767 ---RTHEM 771
               |:|::
  Fly   797 GTLRSHQV 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sema3abNP_571136.1 Sema 27..519 CDD:301699 171/524 (33%)
PSI 517..>553 CDD:214655 18/61 (30%)
Ig_Semaphorin_classIII 583..673 CDD:143279 16/99 (16%)
IG_like 586..654 CDD:214653 11/77 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 727..778 10/49 (20%)
Sema1aNP_001260265.1 Sema_1A 91..546 CDD:200498 163/493 (33%)
PSI 545..>579 CDD:214655 14/34 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3611
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D153798at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11036
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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