DRSC/TRiP Functional Genomics Resources

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Protein Alignment tcf15 and HLH4C

DIOPT Version :9

Sequence 1:NP_571047.1 Gene:tcf15 / 30159 ZFINID:ZDB-GENE-980605-20 Length:183 Species:Danio rerio
Sequence 2:NP_001259243.1 Gene:HLH4C / 31397 FlyBaseID:FBgn0011277 Length:191 Species:Drosophila melanogaster


Alignment Length:112 Identity:43/112 - (38%)
Similarity:55/112 - (49%) Gaps:25/112 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    44 SAEKRRRMSRKTTVGSVVIVKQRNAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRL 108
            |.|:|||..|.|       :|.|.|...|||.|.::.|.:|..||.|:||.|.|:||||||.|:|
  Fly    95 SREERRRRRRAT-------LKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEILKL 152

Zfish   109 ASSYISHLANVLLIGDGGEDAHPCVSAVYSAQGDSGGKQP-RTICIF 154
            |..||::|.:||                 ....||.|... .|.|:|
  Fly   153 AICYIAYLNHVL-----------------ETPXDSAGASSFATSCLF 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tcf15NP_571047.1 HLH 65..116 CDD:278439 26/50 (52%)
HLH4CNP_001259243.1 HLH 108..165 CDD:238036 30/73 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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