DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlb and Ser

DIOPT Version :9

Sequence 1:NP_571033.1 Gene:dlb / 30141 ZFINID:ZDB-GENE-980526-114 Length:615 Species:Danio rerio
Sequence 2:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster


Alignment Length:742 Identity:225/742 - (30%)
Similarity:304/742 - (40%) Gaps:209/742 - (28%)


- Green bases have known domain annotations that are detailed below.


Zfish     5 SLYCLLSVSLLQLVASSGVFELKVHSFSTTRR-----FC-------RRTR-----DCNIFFRICL 52
            :|..|:.:.|:..::::|.|||::...|.|..     :|       |.|:     .|...||:||
  Fly    67 NLIALILILLVHKISAAGNFELEILEISNTNSHLLNGYCCGMPAELRATKTIGCSPCTTAFRLCL 131

Zfish    53 KH---SEDVISAEPPCTFGTGQTSVLRADQSSIASS---AAIRVPFHFKWPGTFSLIIEA---WN 108
            |.   :|...|....|:||...|.:| ...|.:.|.   .||.:||.|:|..:|:||::|   :|
  Fly   132 KEYQTTEQGASISTGCSFGNATTKIL-GGSSFVLSDPGVGAIVLPFTFRWTKSFTLILQALDMYN 195

Zfish   109 AESPKEHHDYTENQNNLISRLATRRRLAVGEDWSQDVHFGDQSELRYSYHVFCDEFYFGEACSDY 173
            ...|        :...||...:....:....:|....|.|..:.:.|...|.|...|:...|:.:
  Fly   196 TSYP--------DAERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVTYYNTTCTTF 252

Zfish   174 CRPRDDTLGHYTCDENGNKECLVGWQGDYCSDPICSSDCSERHGYCESPGECKCRLGWQGPSCSE 238
            ||||||..|||.|...|.|.||.||||..|.:.||.:.|...||.|:.||||:||.||:||.|:|
  Fly   253 CRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGWRGPLCNE 317

Zfish   239 CVHYPGCLHGTCS-QPWQCVCKEGWGGLFCNQDLNYCTNHKPCANGATCTNTGQGSYTCTCRPGF 302
            |:.||||.||:|: ..|:|||...|||:.|:||||:|..|:||.:|.||.||....|.|||..|.
  Fly   318 CMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGL 382

Zfish   303 GGTNCELEINECDCNPCKNGGSC------------------------------------------ 325
            .|..||:..:.|...||:|||:|                                          
  Fly   383 SGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEG 447

Zfish   326 --------------------NDLENDYSCTCPQGFYGKNCEIIAMTCADDPCFNGGTCEEKFTGG 370
                                ..|..|::|.|..|:.|..|||....||..||.:||||.: ..||
  Fly   448 QALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTCID-LIGG 511

Zfish   371 YVCRCPPTFTGSNCEKRLDRCS--HK--------------------------------------- 394
            :.|.|||.:.|..|:..::.|.  |.                                       
  Fly   512 FRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSL 576

Zfish   395 ---PCANGGECVDLGASALCRCRPGFSGSRCETNIDDCARYPCQNAGTCQDGINDYTCTCTLGFT 456
               ||.|..||.:...|..|.|:.|:.|..|..|:|||.. .|:|..||.|.:|||.|.|..||.
  Fly   577 AIGPCINAKECRNQPGSFACICKEGWGGVTCAENLDDCVG-QCRNGATCIDLVNDYRCACASGFK 640

Zfish   457 GKNCSLRADACLTNPCLHGGTCFTHFSGPVCQCVPGFMGSTCEFPVQASLEKMAPRVGQTSPSAV 521
            |::|....|.|.|:||.:||.|........|.|..|:.||.||    .:.|...|     ||   
  Fly   641 GRDCETDIDECATSPCRNGGECVDMVGKFNCICPLGYSGSLCE----EAKENCTP-----SP--- 693

Zfish   522 AVSCVLGVLAVFLGVCVGLVVLRRRRHRLRRQQ--LCDSVFNDLETVNNLDRQHYPYDR---DFS 581
               |:.|                   |.|...:  .|                |.|.||   ...
  Fly   694 ---CLEG-------------------HCLNTPEGYYC----------------HCPPDRAGKHCE 720

Zfish   582 QVK------PCNTEG---RISLAASHT 599
            |::      ||| ||   .:|||.|.|
  Fly   721 QLRPLCSQPPCN-EGCFANVSLATSAT 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlbNP_571033.1 MNNL 21..75 CDD:284966 21/73 (29%)
DSL 141..203 CDD:279722 26/61 (43%)
EGF_CA 270..308 CDD:238011 18/37 (49%)
EGF_CA 311..346 CDD:238011 13/96 (14%)
EGF_CA 392..423 CDD:238011 11/74 (15%)
EGF_CA 425..460 CDD:238011 17/34 (50%)
SerNP_001287558.1 MNNL 83..161 CDD:284966 22/78 (28%)
DSL 220..282 CDD:279722 26/61 (43%)
EGF_CA 350..388 CDD:238011 18/37 (49%)
EGF_CA 490..526 CDD:238011 15/36 (42%)
EGF_CA 610..645 CDD:238011 17/35 (49%)
EGF_CA 647..683 CDD:238011 13/35 (37%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170578055
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.850

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