DRSC/TRiP Functional Genomics Resources

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Protein Alignment gdf3 and scw

DIOPT Version :9

Sequence 1:NP_571023.1 Gene:gdf3 / 30125 ZFINID:ZDB-GENE-980526-389 Length:355 Species:Danio rerio
Sequence 2:NP_001286088.1 Gene:scw / 46000 FlyBaseID:FBgn0005590 Length:400 Species:Drosophila melanogaster


Alignment Length:391 Identity:98/391 - (25%)
Similarity:166/391 - (42%) Gaps:87/391 - (22%)


- Green bases have known domain annotations that are detailed below.


Zfish    24 LVQEKLFLSSMGLWSRPK----PSHHAAVPSQMWKIFKQAS-------------KQTVNDPCVVS 71
            |.::...:..:.|..||:    |:.|.:....:.:::.:.|             |::::|..::|
  Fly    36 LSEQMEMIDILDLGDRPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS 100

Zfish    72 EYGVRGNIVRFMQDQGSLISAPAVHSF----------NCVRKHLFFNMSVLEEVEQLSLAQLEMK 126
            .           :|:..:.|..::.:|          |.:..|:.||.:  :....|||.|..::
  Fly   101 N-----------EDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTN--DVPVDLSLVQAMLR 152

Zfish   127 -FKQDLLLLGPHVFSVDLYRVLKTTLKGVTHESSRKLLQSQTLSPGAHASVLVNLTNLAQSWRKP 190
             :||..|:.....|:|.:||.|..     ..:.|.::|.|...:......:..|||:..:.|.  
  Fly   153 IYKQPSLVDRRANFTVSVYRKLDN-----RQDFSYRILGSVNTTSSQRGWLEFNLTDTLRYWL-- 210

Zfish   191 EKNFGMQL--ELQVMHLNNMLHDHA-------------------YVQIPDIHATLVVVSLNPLQC 234
             .|.|:|.  ||::...::.|...|                   |...|::     :|.:..|:.
  Fly   211 -HNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPFIVGYFNGPEL-----LVKIQKLRF 269

Zfish   235 -RSRRKRSASYYLP----------VTPSNVCKPRRLYIDFKDVGWQDWIIAPQGYLANYCHGECP 288
             |...||.|....|          ..|...|:.....:|||::...:|:|||:.:.|.:|.|.|.
  Fly   270 KRDLEKRRAGGGSPPPPPPPPVDLYRPPQSCERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCN 334

Zfish   289 FPLSESLNGTNHAILQTLVHSFDPKGTPQPCCVPIKLSPISMLYYDNNDNVVLRHYEDMVVDECG 353
            |||...:|.|||||:|||:|...|. .|:|||||..|..|::|.|.|.|.:.|..|:..|..|||
  Fly   335 FPLGTKMNATNHAIVQTLMHLKQPH-LPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECG 398

Zfish   354 C 354
            |
  Fly   399 C 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gdf3NP_571023.1 TGFb_propeptide 27..200 CDD:279078 38/202 (19%)
TGFB 254..355 CDD:214556 45/101 (45%)
scwNP_001286088.1 TGFb_propeptide 39..254 CDD:279078 42/235 (18%)
TGFB 300..400 CDD:214556 45/101 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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