DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mitfa and Mitf

DIOPT Version :9

Sequence 1:NP_570998.1 Gene:mitfa / 30080 ZFINID:ZDB-GENE-990910-11 Length:412 Species:Danio rerio
Sequence 2:NP_001245436.1 Gene:Mitf / 3885647 FlyBaseID:FBgn0263112 Length:837 Species:Drosophila melanogaster


Alignment Length:466 Identity:151/466 - (32%)
Similarity:211/466 - (45%) Gaps:118/466 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish    11 QVQTHLETPSKYHIQQSQRQQVKHYLS-----SALGAKLSP------QASTG--------PGPSQ 56
            ||.|.||.|::||:.|.|:.||:.|||     |..|:..|.      .||||        .|...
  Fly   278 QVSTVLENPTRYHVIQKQKNQVRQYLSESFKPSMWGSHTSEIKLANNSASTGNLQNSSLQKGICD 342

Zfish    57 PAEHGMTPG-----------PGASA-PNSPMALLTLNCEKEMDDV--IEDII---------SLES 98
            |.|.....|           |...| |.||.....:.|    ||:  ||..:         ..|:
  Fly   343 PLERTNRFGCDSAVSAKRIMPSDDAMPISPFGGSFVRC----DDINPIEPTVLRPNSHGAGEPEN 403

Zfish    99 SYSDDILGFMDAGLQMTNTIPVSANLLDMYSNHALPPAGVSISNSCPSSLPAVKRELSVTPSPGM 163
            ::....||...|...:::| ..|:.:::          .:.|| |..|||.:....:|.:.|...
  Fly   404 AHRTAQLGLSKANSSLSST-RSSSGIVN----------SIRIS-STSSSLQSTSAPISPSVSSVA 456

Zfish   164 MHIMDKAGPCGKFDSYQRPDGFP------------------VEAEVRALAKERQKKDNHNLIERR 210
            ..:.:   |...||...:.|.|.                  .:||:.||||:||||||||:||||
  Fly   457 TSVSE---PDDIFDDILQNDSFNFDKNFNSELSIKQEPQNLTDAEMNALAKDRQKKDNHNMIERR 518

Zfish   211 RRFNINDRIKELGTLIPKSNDP------DMRWNKGTILKASVDYIRKLQKEQQKAKELENRQKRL 269
            |||||||||||||||:||.:|.      |:|.|||||||:|||||:.|:.|..:.::.|.||:::
  Fly   519 RRFNINDRIKELGTLLPKGSDAFYEVVRDIRPNKGTILKSSVDYIKCLKHEVTRLRQNELRQRQV 583

Zfish   270 EHANRHLLLRIQELEMQARAHGLTVVASSSLYSAELVARAIKQEPGMGDCTSNLYPHLPSPDMSR 334
            |..||.|:.||:||||||::||:                 :..|..:...::...|:|.|..:| 
  Fly   584 ELQNRKLMSRIKELEMQAKSHGI-----------------LLSENHLTSLSAPTQPYLKSFSLS- 630

Zfish   335 PTTLDLNNGTISYNDSPTE------DGEPGVYDSPNKASTKLEDMLMDNTLSPVGSSDPLLSSGS 393
            ||.   :....|..|.|.|      ||..|     |....:: |..|::....|...||:|||.|
  Fly   631 PTA---SRSRRSLFDQPVEKKIQVIDGADG-----NMGMNQV-DEFMEDCKYAVQGGDPMLSSHS 686

Zfish   394 PVPSNSSGSSS 404
            .:.|.....||
  Fly   687 HMQSAPQSPSS 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mitfaNP_570998.1 MITF_TFEB_C_3_N <11..90 CDD:292573 34/111 (31%)
HLH 197..257 CDD:238036 46/65 (71%)
DUF3371 285..392 CDD:288684 27/112 (24%)
MitfNP_001245436.1 MITF_TFEB_C_3_N <272..>311 CDD:292573 15/32 (47%)
HLH 505..570 CDD:238036 45/64 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593388
Domainoid 1 1.000 85 1.000 Domainoid score I8110
eggNOG 1 0.900 - - E1_KOG1318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 150 1.000 Inparanoid score I4340
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1211990at2759
OrthoFinder 1 1.000 - - FOG0000691
OrthoInspector 1 1.000 - - otm24979
orthoMCL 1 0.900 - - OOG6_109347
Panther 1 1.100 - - LDO PTHR45776
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1708
SonicParanoid 1 1.000 - - X566
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.790

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