Sequence 1: | NP_570994.1 | Gene: | vdra / 30076 | ZFINID: | ZDB-GENE-000210-31 | Length: | 453 | Species: | Danio rerio |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001163061.1 | Gene: | EcR / 35540 | FlyBaseID: | FBgn0000546 | Length: | 878 | Species: | Drosophila melanogaster |
Alignment Length: | 459 | Identity: | 132/459 - (28%) |
---|---|---|---|
Similarity: | 214/459 - (46%) | Gaps: | 78/459 - (16%) |
- Green bases have known domain annotations that are detailed below.
Zfish 2 LTENSAVNSGGKSKCEAGACESTVNGDATSLMDLMAVSTSATGQDQFDRNAPPICGVCGDKATGF 66
Zfish 67 HFNAMTCEGCKGFFRRSMKRKASFTCPFNGNCTITKDNRRHCQACRLKRCIDIGMMKEFILTDEE 131
Zfish 132 VQRKKDLIMKRKEEEAAREARKPRLSDEQMQIIN-SLVEAHHKTY-DDSYSDFVRFRPPVREGPV 194
Zfish 195 TRSASRAASLHSLSD---ASSDSFNHSPESVDTKLNFSNLLMMYQDSGSPDSSEEDQQSRLSM-- 254
Zfish 255 ---------LPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLR-------- 302
Zfish 303 SNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLL 367
Zfish 368 SPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRL---LYAKMIQKLADLRSLNEEHSKQYRS 429
Zfish 430 LSFQ 433 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vdra | NP_570994.1 | NR_DBD_VDR | 48..154 | CDD:143513 | 44/105 (42%) |
Hinge | 129..158 | 7/28 (25%) | |||
NR_LBD_VDR | 156..452 | CDD:132731 | 79/305 (26%) | ||
Vitamin D3 binding | 255..265 | 1/9 (11%) | |||
Interaction with coactivator LXXLL motif | 274..292 | 8/17 (47%) | |||
Vitamin D3 binding | 299..306 | 4/14 (29%) | |||
9aaTAD. /evidence=ECO:0000250|UniProtKB:P11473 | 442..450 | ||||
EcR | NP_001163061.1 | NR_DBD_EcR | 261..351 | CDD:143535 | 43/114 (38%) |
NR_LBD_EcR | 420..652 | CDD:132736 | 66/231 (29%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 130 | 1.000 | Domainoid score | I5174 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24082 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |