DRSC/TRiP Functional Genomics Resources

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Protein Alignment POMT2 and R12E2.13

DIOPT Version :10

Sequence 1:XP_047287268.1 Gene:POMT2 / 29954 HGNCID:19743 Length:826 Species:Homo sapiens
Sequence 2:NP_491320.1 Gene:R12E2.13 / 172010 WormBaseID:WBGene00020038 Length:206 Species:Caenorhabditis elegans


Alignment Length:191 Identity:55/191 - (28%)
Similarity:79/191 - (41%) Gaps:46/191 - (24%)


- Green bases have known domain annotations that are detailed below.


Human   355 LHSHRHLYPEGIGARQQQVTTYLHK-DYNNLWIIKKHNTNSDPLDPSFPV--------EFVRHGD 410
            ||||...|  |.|:.||.||...:. |.|:.|.|             ||.        :.::.||
 Worm    43 LHSHDVKY--GSGSGQQSVTAVKNSDDINSHWQI-------------FPALNAKCNRGDAIKCGD 92

Human   411 IIRLEHKECPLKKIWRWEQKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFWRIEVVNRK 475
            .|||:|             ..|...||||:..||::::|.:|:.:|.....|:.|.|.:      
 Worm    93 KIRLKH-------------LTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTV------ 138

Human   476 FGNRIKVLRS-RIRFIHLVTGCVLGSSGKVLPKWGWEQLEVTCTPYLKETLNSIWNVEDHI 535
            ..|..:.|.| :.:..|.|||..|..||:...:....|.||..|..:  |..|.|.|.:.|
 Worm   139 ICNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSI--TGGSAWKVAEGI 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POMT2XP_047287268.1 PMT 62..306 CDD:396786
beta-trefoil_MIR_POMT2 337..536 CDD:467753 55/191 (29%)
PMT_4TMC 555..822 CDD:465056
R12E2.13NP_491320.1 beta-trefoil_MIR_SDF2_meta 26..201 CDD:467764 55/191 (29%)
Blue background indicates that the domain is not in the aligned region.

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