DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rdh16 and Adhr

DIOPT Version :9

Sequence 1:	NP_954678.1	Gene:	Rdh16 / 299511	RGDID:	735050	Length:	317	Species:	Rattus norvegicus
Sequence 2:	NP_001027272.1	Gene:	Adhr / 3772432	FlyBaseID:	FBgn0000056	Length:	272	Species:	Drosophila melanogaster

Alignment Length:	161	Identity:	45/161 - (27%)
Similarity:	69/161 - (42%)	Gaps:	32/161 - (19%)

- Green bases have known domain annotations that are detailed below.

  Rat   109 LVNNAGISGHLGPNEWMNKQNIASVLDVNLLGMIEVTLSTVPLV-RK---ARGRVVNVASIAG-- 167
            |:|.|.:         .::.||.:.::.||.||:....:.:|.: ||   ..|.:|||.|:.|
  Fly    89 LINGATL---------CDENNIDATINTNLTGMMNTVATVLPYMDRKMGGTGGLIVNVTSVIGLD 144

  Rat   168 -RLSFCGGGYCISKYGVEAFSDSLRRELSYF--GVKVAIVEPGFFRTDVTN--------GVTLSS 221
             ...||  .|..||:||..|:.||...|.|.  ||.|..|..|..|..|..        |.:.:.
  Fly   145 PSPVFC--AYSASKFGVIGFTRSLADPLYYSQNGVAVMAVCCGPTRVFVDRELKAFLEYGQSFAD 207

  Rat   222 NFQMLWDQTSSEVREVYGENYLASYLKMLNG 252
            ..:....|::|    |.|:|.:.:..:..||
  Fly   208 RLRRAPCQSTS----VCGQNIVNAIERSENG 234

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rdh16	NP_954678.1	type2_17beta_HSD-like_SDR_c	30..305	CDD:187665	45/161 (28%)
Rdh16	NP_954678.1	adh_short	30..214	CDD:278532	36/113 (32%)
Adhr	NP_001027272.1	ADH_SDR_c_like	7..248	CDD:187584	45/161 (28%)
Adhr	NP_001027272.1	adh_short	7..195	CDD:278532	37/116 (32%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR43313
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100