DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myo1a and Mhc

DIOPT Version :9

Sequence 1:NP_062197.1 Gene:Myo1a / 299509 RGDID:3135 Length:1043 Species:Rattus norvegicus
Sequence 2:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster


Alignment Length:1116 Identity:340/1116 - (30%)
Similarity:533/1116 - (47%) Gaps:193/1116 - (17%)


- Green bases have known domain annotations that are detailed below.


  Rat    10 VEDLILLEPLDEESLIKNLQLRYEKKEIYTYIGNVVISMNPYQQLPIYGPEFIAKYRDYTFYELK 74
            :||:..:..|:...::.||:.||..|.||||.|...:::|||::.|:|.......||.....|:.
  Fly    88 IEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVP 152

  Rat    75 PHIYALANVAYQSLKDRDRDQCILITGESGAGKTEASKLVMSYVAAVCGKGEQVN-------SVK 132
            |||:|:::.||..:.....:|.:||||||||||||.:|.|::|.|.| |..::.:       |::
  Fly   153 PHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATV-GASKKTDEAAKSKGSLE 216

  Rat   133 EQLLQSNPVLEAFGNAKTIRNDNSSRFGKYMDIEFDFKGSPLGGVITNYLLEKSRVVKQLKGERN 197
            :|::|:||||||||||||:||||||||||::.|.|...|...|..|..|||||:||:.|...||:
  Fly   217 DQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERS 281

  Rat   198 FHIFYQLLAGADTQLLKALKLEEDARGYAYLN-GEVSRVNGMDDASNFRAVQNAMAVIGFSEEEI 261
            :|||||:::|:...:.....|.::...|..:: |:|: |..:|||..|.....|..::||:::|.
  Fly   282 YHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVT-VASIDDAEEFSLTDQAFDILGFTKQEK 345

  Rat   262 RQVLEVTALVLKLGNVKLADEFQANGLPASGVCDGKGIQE---IGEMMGLNSAELEKALCSRTME 323
            ..|..:||.|:.:|.:|    |:..|.......||:  :|   :.::.|.::|||.|.|....::
  Fly   346 EDVYRITAAVMHMGGMK----FKQRGREEQAEQDGE--EEGGRVSKLFGCDTAELYKNLLKPRIK 404

  Rat   324 TGKEKVVTVLNVIQAQYARDALAKNIYSRLFDWIVNRINESIKVGTGEKRK-VMGVLDIYGFEIL 387
            .|.|.|....||.|...:..||.|.::.|||.|:|.:.||::  .|.:||: .:|||||.||||.
  Fly   405 VGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETL--DTQQKRQHFIGVLDIAGFEIF 467

  Rat   388 EDNSFEQFVINYCNEKLQQVFIELTLKEEQEEYKREGIPWTKVEYFDNGIIC-DLIEHSQRGILA 451
            |.|.|||..||:.||||||.|.......||||||||||.|..:::..:.:.| |||| ...|||:
  Fly   468 EYNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILS 531

  Rat   452 MLDEECLRPGVVSDTTFLAKL-NQLFSKHSHYES----KVTQNAQRQYDRTMGLSCFRICHYAGK 511
            :|:||.:.| ..:|.||..|| |....|.:.::.    |..|.|..          |.|.||||.
  Fly   532 ILEEESMFP-KATDQTFSEKLTNTHLGKSAPFQKPKPPKPGQQAAH----------FAIAHYAGC 585

  Rat   512 VTYNVTSFIDKNNDLLFRDLSQTMWKAQHPLLHSLFPE-----GNPKEASLKRP------PTAGT 565
            |:||:|.:::||.|.|...:.....|:|:.||..:|.:     |..::|...|.      .|..:
  Fly   586 VSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSS 650

  Rat   566 QFKNSVAILMKNLYSKNPNYIRCIKPNDQQQQGRFTSELVMVQARYLGLLENVRVRRAGYAFRQA 630
            .:|..:..||..|.|..|:::|||.||:.:|.|...:.|||.|....|:||.:|:.|.|:..|..
  Fly   651 AYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMM 715

  Rat   631 YKPFLERYRLLSRSTWPR-WNG--EDREGVEKVLGSLILSSEELAYGRTKIFIRSPKTLFYLEEQ 692
            |..|..||:::.    |: ..|  :|::..|.::..:.|..::...|.||:|.|: ..|..:||.
  Fly   716 YPDFKMRYKIMC----PKLLQGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRA-GVLGQMEEF 775

  Rat   693 RRLRLQQLATLIQKVYRGWRCRTHYQQMRKSQILISAWFRGNKQKKHYGKIRSSVLLIQAFVRGW 757
            |..||.::.:.:|                       ||.||...:|.:.|::...:.::.     
  Fly   776 RDERLGKIMSWMQ-----------------------AWARGYLSRKGFKKLQEQRVALKV----- 812

  Rat   758 KARKNYRKYFRSGAAITLANFIYQSITQKF--LLNLKKNLPSTKVLDNTWPAAPYRCFNTANQEL 820
             .::|.|||      :.|..:.:..:.||.  |||:.:                      ...|:
  Fly   813 -VQRNLRKY------LQLRTWPWYKLWQKVKPLLNVSR----------------------IEDEI 848

  Rat   821 QHLFYQWKCK----------KYRDQLSPKQVQTLREKLCASELFKGKKASYLQSVPVPFRGDYVG 875
            ..|  :.|.|          |.|.:|.....:.|.||....:...|:|.: ||        ||  
  Fly   849 ARL--EEKAKKAEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGA-LQ--------DY-- 900

  Rat   876 LQGNPKL---------------QRLKGREEGPVLVADTVKKVNR---GNGKTSSRILL------- 915
            .:.|.||               :||...|:....:....||.::   |..|....:.|       
  Fly   901 QERNAKLTAQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQ 965

  Rat   916 --LTKGHVI--LTDAKKSQAQIVIKL-EDVAGVSVTSLEDGLFSLHLSEMSSAASKGDILLISDH 975
              .||.|.|  |.|....|.:::.|| ::......|:.:.|      .|:.:|..|      .:|
  Fly   966 DKATKDHQIRNLNDEIAHQDELINKLNKEKKMQGETNQKTG------EELQAAEDK------INH 1018

  Rat   976 LVELLTKMYQA---VLDATQRQLPVTVTEKFSVRFKEGSVAVKVTQGPQGSGNR-----KLTCKK 1032
            |.::..|:.|.   :.|:.:|:..|....:.|.|..||.  :|:||.......|     :.|.::
  Fly  1019 LNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGD--LKLTQEAVADLERNKKELEQTIQR 1081

  Rat  1033 KGSSSMEVTVR 1043
            |......:|.:
  Fly  1082 KDKELSSITAK 1092

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Myo1aNP_062197.1 MYSc_Myo1 22..681 CDD:276829 254/690 (37%)
IQ 742..764 CDD:197470 2/21 (10%)
Myosin_TH1 847..1042 CDD:399188 49/232 (21%)
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832
MYSc 81..777 CDD:214580 261/715 (37%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 254/690 (37%)
Myosin_tail_1 842..1897 CDD:279860 59/300 (20%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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