Sequence 1: | XP_038968034.1 | Gene: | Syne3 / 299356 | RGDID: | 1304563 | Length: | 1009 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001188695.1 | Gene: | Msp300 / 3771968 | FlyBaseID: | FBgn0261836 | Length: | 13540 | Species: | Drosophila melanogaster |
Alignment Length: | 1273 | Identity: | 255/1273 - (20%) |
---|---|---|---|
Similarity: | 434/1273 - (34%) | Gaps: | 431/1273 - (33%) |
- Green bases have known domain annotations that are detailed below.
Rat 3 QQPQEDFDRSVEDAQAWMKAVQEQLQVNDNTKGPRAALE---------ARLRET--EKICQLEPE 56
Rat 57 GCIKVELVLRAAEAL---------LATCQEGQKPEILARLRDIKSQWEETVTY--MTHCHSRIEW 110
Rat 111 V------WLHW------------------------SEYLLAQDEFYRWFQKMV--------VT-- 135
Rat 136 ---------LEPPV--ELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAGSLFSR------ 183
Rat 184 --------IGD------------------------------------PSVDEEAQKRMKAEYDAV 204
Rat 205 KARAQHR-------VELLAQVAQDHEQYREDVSEFQLWLKALVEKVHGCLGRNCKLATEPRL--- 259
Rat 260 ---SVLQDIAKDFPRGEESLNRLEEQAVGVIRNTSPLGAERISGELEEMRMVLEKLRVLWKEEEG 321
Rat 322 RLQGLLQSKGACEQQIQQLEVELGELKKVLQRLAQQ-GLEP------TVKTATEDELVAHWRLFS 379
Rat 380 GTRAALASEEPR------------------VDRLQTQLKELVIFPDLQSLSDSVVAAIQEYQSMK 426
Rat 427 GK--NARLHNATRTELWQ------RSQRSLNDL--------QLWKALAQRLLDI-TTSLPDLASI 474
Rat 475 HTFLPQIEAA------LTESSRLKEQLSMLQLKTDLLGSIFGQERAATLLEQVTGSVRDRDLLHN 533
Rat 534 SLLQRKSKLQSLLVQHKDFGVAFDPLHRKLLDLQARIQAEKGLQRDLPGKQVQLLRLQGLQEEGL 598
Rat 599 DLGTQIEAVRSLAQGNSKYQH-KVDQISSDQQALQRSLEFWSQAHRVVQLTLR-------WSFSP 655
Rat 656 QLTNLGNPSE----TRPEDLVDRCQQNVREHCTFSHRLLELQLWITMATQTLESHQ---GDMRLW 713
Rat 714 DAESQEAGLERLLSEIPEKEVQLSLLQALG-QLVMKKSSPEGAAVVQEELRKLMES--------- 768
Rat 769 -----WQALRLLEESMLSLMRNEQLQRTEVDTGKKQVFTNNIPKAGFLINPQDPIPRRRHGVNPP 828
Rat 829 EEHDLHEDHPQLLREFEQWLQAENSKLLRITTMRTATAKDLRTRELKLQELEARIPEGQILFENL 893
Rat 894 LRHRPARDPSNE---------LEDLRYRWM-------LYKSKLKG----------------SGDL 926
Rat 927 L--TESSPGELTAFQKSRQQKR-----------------WRSPCSLLQKACRVALPLQLLLLLFL 972
Rat 973 LLLFLLPAGEEERSCALANNFARSFALMLRY-NGPPPT 1009 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Syne3 | XP_038968034.1 | PRK03918 | <170..>401 | CDD:235175 | 51/318 (16%) |
SMC_prok_B | <296..>548 | CDD:274008 | 59/299 (20%) | ||
SPEC | 578..775 | CDD:413338 | 47/226 (21%) | ||
KASH | <980..1009 | CDD:402255 | 14/29 (48%) | ||
Msp300 | NP_001188695.1 | SPEC | 17..220 | CDD:238103 | |
SPEC | 9546..9732 | CDD:295325 | |||
sbcc | 11187..12008 | CDD:129705 | |||
SMC_prok_B | 11614..12442 | CDD:274008 | 2/8 (25%) | ||
SPEC | 11994..12156 | CDD:295325 | |||
SPEC | 12374..12564 | CDD:295325 | 29/134 (22%) | ||
Lipase_chap | 12376..12529 | CDD:281297 | 21/96 (22%) | ||
SPEC | 12703..12923 | CDD:238103 | 44/253 (17%) | ||
SPEC | 12816..13032 | CDD:295325 | 48/243 (20%) | ||
SPEC | 13196..13374 | CDD:238103 | 41/229 (18%) | ||
KASH | 13484..13540 | CDD:287506 | 25/56 (45%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR47535 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |