DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syne3 and Msp300

DIOPT Version :9

Sequence 1:XP_038968034.1 Gene:Syne3 / 299356 RGDID:1304563 Length:1009 Species:Rattus norvegicus
Sequence 2:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster


Alignment Length:1273 Identity:255/1273 - (20%)
Similarity:434/1273 - (34%) Gaps:431/1273 - (33%)


- Green bases have known domain annotations that are detailed below.


  Rat     3 QQPQEDFDRSVEDAQAWMKAVQEQLQVNDNTKGPRAALE---------ARLRET--EKICQLEPE 56
            |:.|::..|..:||.|....: ||..:.......||||:         .:|.|:  :::.||:.|
  Fly 12433 QEQQQELARHCDDALATAMRM-EQASIGQRISNLRAALKTWQGFLQRVTQLSESYEQRVNQLQQE 12496

  Rat    57 GCIKVELVLRAAEAL---------LATCQEGQKPEILARLRDIKSQWEETVTY--MTHCHSRIEW 110
            .....:|:...:|:|         |......|:.::.|::..::|.   |||.  :..|.|..:.
  Fly 12497 FGAAQKLLDANSESLPTQPAAIEQLLGSLRAQRVQLGAQVSALESL---TVTQEELKECISPHDM 12558

  Rat   111 V------WLHW------------------------SEYLLAQDEFYRWFQKMV--------VT-- 135
            .      ||.|                        |.|.:..|...:|.|::.        ||  
  Fly 12559 KTIRQRNWLLWQQHADLDYQLANLINSIEERLSLLSNYQIRYDRISQWLQRLEQRVEKDADVTAM 12623

  Rat   136 ---------LEPPV--ELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAGSLFSR------ 183
                     ||..|  ||||..||::|.||.::.|| .:.::..:..::.:::.||..|      
  Fly 12624 TNPEQAAKQLEQQVNSELQLRDKEREWLLSTSRELL-TLYSEPEVRSQVQQQSDSLIDRWQRLKY 12687

  Rat   184 --------IGD------------------------------------PSVDEEAQKRMKAEYDAV 204
                    ||:                                    |:|.|...|    |::.:
  Fly 12688 LAKQKATKIGELKMTLLRLEERIALIRAWLFEVESQLDKPLNFESYTPNVIEAKLK----EHEQI 12748

  Rat   205 KARAQHR-------VELLAQVAQDHEQYREDVSEFQLWLKALVEKVHGCLGRNCKLATEPRL--- 259
            :...:|.       :.|:..:..|.:.:|..|:  ...|.|..:.:.......|..:.|.:.   
  Fly 12749 QRSIEHHSSNVGEVLNLVEMLLNDADSWRTQVN--TSGLAASAQNLEQRWKNVCSQSAERKARIL 12811

  Rat   260 ---SVLQDIAKDFPRGEESLNRLEEQAVGVIRNTSPLGAERISGELEEMRMVLEKLRVLWKEEEG 321
               ::||.:.|.....:..|.:.|.|..|..|:.......::.....|:|..||:|         
  Fly 12812 TIWNLLQQLIKLTAEHKNWLGKQESQIAGFERDQKSHSKHKLEERQMELRAKLEEL--------- 12867

  Rat   322 RLQGLLQSKGACEQQIQQLEVELGELKKVLQRLAQQ-GLEP------TVKTATEDELVAHWRLFS 379
                        |.|    .|.|.:|:::..:||.. |:||      |:.|..   :|:.||..:
  Fly 12868 ------------ESQ----SVNLRQLEQIYAKLAMSAGVEPENIQKLTLPTKV---MVSMWRQLT 12913

  Rat   380 GTRAALASEEPR------------------VDRLQTQLKELVIFPDLQSLSDSVVAAIQEYQSMK 426
            ....||.....:                  ::.:|..|::|....:.|:......|.:|..:|::
  Fly 12914 PRCHALLDAIDKDAKLMREFNNAQLEATNSLNAIQKALEQLPSAENQQTSKAEPKAVLQRLESLE 12978

  Rat   427 GK--NARLHNATRTELWQ------RSQRSLNDL--------QLWKALAQRLLDI-TTSLPDLASI 474
            .|  :|:.|......|.|      :.|..|..|        .||:.:..|::.: ||.|...|..
  Fly 12979 KKLQDAQQHVQQADNLAQEAKTRTKQQPQLKQLLELVSAYTTLWQTVQTRIVTLKTTWLTRAAQA 13043

  Rat   475 HTFLPQIEAA------LTESSRLKEQLSMLQLKTDLLGSIFGQERAATLLEQVTGSVRDRDLLHN 533
            ...||..|||      .|.|.|...|...:|.:|.:..      :.|.::|           |..
  Fly 13044 AASLPVSEAANAAVQVNTLSQRKLRQAQQMQRETSITA------KDAYIME-----------LQT 13091

  Rat   534 SLLQRKSKLQSLLVQHKDFGVAFDPLHRKLLDLQARIQAEKGLQRDLPGKQVQLLRLQGLQEEGL 598
            ::.:.::.|              |.|.|.::|...:           ||.| ::.:|.|..:...
  Fly 13092 AITECQNNL--------------DELQRTVVDKTRK-----------PGPQ-KIAKLLGNAQSST 13130

  Rat   599 DLGTQIEAVRSLAQGNSKYQH-KVDQISSDQQALQRSLEFWSQAHRVVQLTLR-------WSFSP 655
            :|      |:.|:       | .:.:..:|.||        ::...|.:||||       |....
  Fly 13131 EL------VKHLS-------HLLLTECKADDQA--------AEVDTVAELTLRFDTLQSQWKARQ 13174

  Rat   656 QLTNLGNPSE----TRPEDLVDRCQQNVREHCTFSHRLLELQLWITMATQTLESHQ---GDMRLW 713
            |...  |.||    |.|     .|.|  |......:.|..|:.|:..|..|.::..   .::.|.
  Fly 13175 QHDQ--NASEVGRLTCP-----LCTQ--RNWQQIDNDLWRLEQWLQFAESTQKAQSAPPSNIELL 13230

  Rat   714 DAESQEAGLERLLSEIPEKEVQLSLLQALG-QLVMKKSSPEGAAVVQEELRKLMES--------- 768
            :..:|:.  ...|.::...:..:|.|..:| .|.......|.|    .:||..:|:         
  Fly 13231 EDVTQDH--REFLLDLESHKSIISSLNVVGDHLATHTLDTEKA----RQLRSRLEADNERWNNVC 13289

  Rat   769 -----WQALRLLEESMLSLMRNEQLQRTEVDTGKKQVFTNNIPKAGFLINPQDPIPRRRHGVNPP 828
                 ||.|     ...:||.|.:..:|                .|.|:   :.:.|....:...
  Fly 13290 INATKWQGL-----LQTALMGNSEFHQT----------------IGELV---EWLQRTEQNIKAS 13330

  Rat   829 EEHDLHEDHPQLLREFEQWLQAENSKLLRITTMRTATAKDLRTRELKLQELEARIPEGQILFENL 893
            |..||.|:...|..:|:::                   ||||.   :|:..|.|:...|...:.|
  Fly 13331 EPVDLTEERSVLETKFKKF-------------------KDLRA---ELERCEPRVVSLQDAADQL 13373

  Rat   894 LRHRPARDPSNE---------LEDLRYRWM-------LYKSKLKG----------------SGDL 926
            ||.....:..::         |.|||.|..       :|..||..                |.:|
  Fly 13374 LRSVEGSEQQSQHTYERTLSRLTDLRLRLQSLRRLSGIYIVKLGAVLGYEGDNLGVPLHMLSSEL 13438

  Rat   927 L--TESSPGELTAFQKSRQQKR-----------------WRSPCSLLQKACRVALPLQLLLLLFL 972
            |  |..|...:.|...:.:...                 .......|.:..|.:||:|.|:||.|
  Fly 13439 LDNTTLSTSSMQAAAPNTENANNTDGGDAVDGDVINTTVLARGARFLGRVARASLPIQALMLLLL 13503

  Rat   973 LLLFLLPAGEEERSCALANNFARSFALMLRY-NGPPPT 1009
            .:..|:|.| |:.:|..:|.||||...||.| :|||||
  Fly 13504 GVATLVPHG-EDYTCMFSNTFARSLEPMLSYPHGPPPT 13540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Syne3XP_038968034.1 PRK03918 <170..>401 CDD:235175 51/318 (16%)
SMC_prok_B <296..>548 CDD:274008 59/299 (20%)
SPEC 578..775 CDD:413338 47/226 (21%)
KASH <980..1009 CDD:402255 14/29 (48%)
Msp300NP_001188695.1 SPEC 17..220 CDD:238103
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705
SMC_prok_B 11614..12442 CDD:274008 2/8 (25%)
SPEC 11994..12156 CDD:295325
SPEC 12374..12564 CDD:295325 29/134 (22%)
Lipase_chap 12376..12529 CDD:281297 21/96 (22%)
SPEC 12703..12923 CDD:238103 44/253 (17%)
SPEC 12816..13032 CDD:295325 48/243 (20%)
SPEC 13196..13374 CDD:238103 41/229 (18%)
KASH 13484..13540 CDD:287506 25/56 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47535
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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