Protein Alignment Clmn and Msp300

DIOPT Version :9

• Sequence 1: XP_017449593.1
• Gene: Clmn / 299285
• RGDID: 1306741
• Length: 1107
• Species: Rattus norvegicus
• Sequence 2: NP_001188695.1
• Gene: Msp300 / 3771968
• FlyBaseID: FBgn0261836
• Length: 13540
• Species: Drosophila melanogaster
• Alignment Length: 987
• Identity: 193/987 - (19%)
• Similarity: 324/987 - (32%)
• Gaps: 314/987 - (31%)

  Rat   203 SRSSPSSSLSPGSGGTDSDSSYPPTPTTERSVA-----------VAVKDQRKAIKTLLSWV---- 252
            |.||....|......:|.:....|.|..|.:|.           |:|.|..|.|.|:.:..
  Fly  3259 SSSSWMDVLDEPMNFSDDEEEPVPEPLKEETVVKEVVEEKPIVEVSVVDDSKTITTVTTTTTTTE 3323

  Rat   253 -----------------------QRKTRKYGVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQAL 294
                                   .:|....|:.|.:.:.||.              .::|.....
  Fly  3324 TISELPISEEPKKVEEPEKIPEEPKKPAYAGLPVDESSSSWM--------------DVLDEPMNF 3374

  Rat   295 EDSTRENLEKAFRIAHDSLHIPRLLEPEDIM-VDMPDEQSIVTYVA------------------- 339
            .|...|.:.:..:   :...:..::|.:.|: |.:.|:...:|.|.
  Fly  3375 SDDEEEPVPEPVK---EETVVKEVVEEKPIVEVSVVDDSKTITTVTTTTTTTETISELPIPEEPK 3436

  Rat   340 QFLERFPELDPEDFVNP-----DKEAPI-----ESTFVR-----IKESPSEQESR-------VLL 382
            :.:|...:.:|..|..|     |:|.|:     |.|.|.     |.||....||:       .::
  Fly  3437 KVVEPEKKAEPSSFDEPMNFSDDEEEPVPEPLKEETLVEEVVEPIVESSVVDESKTITTVTTTIV 3501

  Rat   383 LSQNGEQPYTVSHETSHPPP----------DKVFVCDQLESP------------------TGFSL 419
            .|.|  |..|:..|.|.|.|          |.|   .|||.|                  || ::
  Fly  3502 TSTN--QTNTLEEENSLPAPAEPQIISNVVDDV---SQLEKPLEGPIDTWSSVLEDTISNTG-NI 3560

  Rat   420 G--SAPSHKLPD-SPTDFMHQIIDQVFQASMGN----TESTTEPTPESSI-----LSTRKDGRRS 472
            |  |..|...|: :|:...|...||. ...:.|    .|......||.:|     ....|..:|.
  Fly  3561 GYTSTLSADAPEFTPSYLRHTFSDQT-HTFLANERIYNEFIPRNRPEQTIGPHQKPKKAKPSKRQ 3624

  Rat   473 NS----------------------LPVKKSVHFETDLHKDASCSKDPFYSSEFRFEGSPKATKEL 515
            |.                      :.:.:.|....::::|.....|...:|....:..|  :.||
  Fly  3625 NKKVEIREKIIDVQPAQEINIVEPVQIVEEVENVWNMNRDGKSYADVLLNSGVTGDDVP--STEL 3687

  Rat   516 SKQDGH------ASLAEVSKEKKPE-QEARLVLEAASDKAPEDTIVDTDAMSQDAQLPQDSSFCN 573
            .|:..|      ....|..|:.||| ::|..|:|.:|      ..::::....::...|......
  Fly  3688 HKEIPHKTDIVKTKAQEPKKKSKPEKRQAEKVIELSS------ASIESEKSKPNSDSEQSKPTTE 3746

  Rat   574 GNVENPASLGEKGPSPPSPRDNTILANSVELKVPLLTVEPMDKDDYFECIPLKASKFNRDLVDFA 638
            ..:..|.:...|.||    .|...::::.||....|...|.:..|              ..|:..
  Fly  3747 SELSKPTTESSKEPS----SDERDVSSTSELTWSALVQRPGEWSD--------------STVNKK 3793

  Rat   639 STSQAFVEDPSSHKKTPGEEEGSENYTEKPGKRKSKSPHAETESTESRLEPIKLETPPKDPEQED 703
            .||...|....:|::.  |:|..:..|:....:|||.|..:..||.|  |..:.||.|:..|
  Fly  3794 QTSHTAVTTKETHRQK--EKEEPKKTTKAKKTKKSKKPVVDPVSTTS--EDEQPETVPEPVE--- 3851

  Rat   704 QGHTLPPETAADKKPEVYEKAKRKSTRHHSEEEGEAEGGLSAV--GGEMPSNPPSTSVSLETLRS 766
               .:|....:..:|||.:|.          |...|....|.|  .||...|..:...:..|...
  Fly  3852 ---AMPAPIESKPEPEVVQKL----------ESSNAFSWASLVKRPGEWIDNTVTHIKTAVTPLP 3903

  Rat   767 HSEEGL--DFKPSPPLSKIS-------VIPHD-LFYYPHYEVPLAAVLEAYAEGGE--DLKSED- 818
            ..:|.:  |.||..|..:.:       .:|.| :...|..|:    |:|...|..|  .:|:.:
  Fly  3904 DVKEPIKKDKKPQKPKKQKATKKPTPVALPEDEVSSEPSEEI----VVECEVEEKETKSIKNTEN 3964

  Rat   819 ----ADLEHPDGSYLQD--SREEEEE-EDEEEEEAHSSHSSCNFSLPVDNSYPRVNDHVSHVDGS 876
                |.|....|.::.|  ||::..| ..||.:|.|                ||....:
  Fly  3965 AFSWASLVKKPGEWVDDIASRKKPVEIIHEEPKEVH----------------PRKERKI------ 4007

  Rat   877 SEGPTSASEPGSPPSHEDHQPMETKENGPVESQQ-------SQEPPTPELSTKPLEEK------- 927
                   |:|...|..|:    .||.|...|:::       |:|....|: .:|..|.
  Fly  4008 -------SKPQPKPQSEN----TTKRNNKKETREPVVVHSTSEESDVVEV-LEPTNENTITWAKI 4060

  Rat   928 ------LTEVPTSSKKKEKRKHMDHVESSLFIAPGTVRSSDDLEENPCEHKVPS-------RNSH 979
                  :|::...:|::.|.|..:.|:..:        ..|.:|::|.:|.:.|       .:.|
  Fly  4061 ASQIDHMTDLKPKAKQETKPKQGERVKEQI--------RFDRIEKHPKDHAISSDLSQQKGDSGH 4117

  Rat   980 SDSSIYIRRHTN 991
            |.||:...:.|:
  Fly  4118 SWSSVVSHQVTD 4129

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Clmn	XP_017449593.1	None
Msp300	NP_001188695.1	SPEC	17..220	CDD:238103
		SPEC	9546..9732	CDD:295325
		sbcc	11187..12008	CDD:129705
		SMC_prok_B	11614..12442	CDD:274008
		SPEC	11994..12156	CDD:295325
		SPEC	12374..12564	CDD:295325
		Lipase_chap	12376..12529	CDD:281297
		SPEC	12703..12923	CDD:238103
		SPEC	12816..13032	CDD:295325
		SPEC	13196..13374	CDD:238103
		KASH	13484..13540	CDD:287506

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0516
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D46at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR47535
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.010