Sequence 1: | NP_059004.1 | Gene: | Sema6c / 29744 | RGDID: | 3659 | Length: | 960 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_477507.1 | Gene: | Sema2a / 36846 | FlyBaseID: | FBgn0011260 | Length: | 724 | Species: | Drosophila melanogaster |
Alignment Length: | 587 | Identity: | 190/587 - (32%) |
---|---|---|---|
Similarity: | 296/587 - (50%) | Gaps: | 104/587 - (17%) |
- Green bases have known domain annotations that are detailed below.
Rat 9 PLL-LLLLLSLPQAQTAFPQDPI-------PLLTSDLQGTSPSSWFRGLEDDAVAAELGLDFQRF 65
Rat 66 LTLNR---TLLVAARDHVFSFDLQ------AQEEGEGLVPNKFLTWRSQDMENCAVRGK-LTDEC 120
Rat 121 YNYIRVLVPWD-SQTLLACGTNSFSPVCRSY----GITSLQQEGEELS---GQARCPFDATQSTV 177
Rat 178 AISAEG-------SLYSATAADFQASDAVVYRSLGPQPPL-------------RSAKYDSKWLRE 222
Rat 223 PHFVYALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCS 287
Rat 288 VPGDSTFYFDVLQSLTG-PVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRS 351
Rat 352 LDGAWTPVSEDKVPSPRPGSCAGVGAAALFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPL--- 413
Rat 414 --LTLTSRALLTQVAVDGMAGPHRNTTVLFLGSNDGTVLKVLP--PGGQSLGPEPIILEEIDAYS 474
Rat 475 HARCSGKRSPRAARRIIGLELDTEGHRLFVAFPGCIVYLSLSRC-ARHGACQRSCLASLDPYCGW 538
Rat 539 HR 540 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sema6c | NP_059004.1 | Sema | 52..516 | CDD:417757 | 163/509 (32%) |
PSI | 517..>538 | CDD:396154 | 9/21 (43%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 555..624 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 685..725 | ||||
PHA03307 | 730..>956 | CDD:223039 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 745..792 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 806..960 | ||||
Sema2a | NP_477507.1 | Sema_2A | 66..523 | CDD:200499 | 162/500 (32%) |
Ig_Semaphorin_C | 573..664 | CDD:143180 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3611 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR11036 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |