Sequence 1: | NP_062139.2 | Gene: | Scn8a / 29710 | RGDID: | 3638 | Length: | 1978 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 2653 | Identity: | 822/2653 - (30%) |
---|---|---|---|
Similarity: | 1172/2653 - (44%) | Gaps: | 863/2653 - (32%) |
- Green bases have known domain annotations that are detailed below.
Rat 53 PKPNSDLEAGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLN---RGKTLFRFSATPALYI 114
Rat 115 LSPFNLIRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIA 179
Rat 180 RGFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL 244
Rat 245 IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCV-----VWPINFNESYLENGTRGFDWEE 304
Rat 305 YINNKTNFYMVPGMLEPLLCGNSSDAGQCPEGFQCMKAGRNPNYGYTSFDTFSWAFLALFRLMTQ 369
Rat 370 DYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATLEEAE------QK 428
Rat 429 EAEF---------KAMLEQLKKQQEEAQAAAMA-----------TSAGTVSEDAIEEEGEDGVGS 473
Rat 474 PRSSSELSKLSS---------KSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAF 529
Rat 530 RLPDNRIGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEES 594
Rat 595 E--------GRRDSLFIPIRARERRSSYSGYSGYSQCSRSSRIFPSLRRSVKRNSTVDCNGVVSL 651
Rat 652 IGPGSHIGRLLPEATTEVEIKKKGPGSLLVSMDQLASYGRKDRINSIMSVVTNTLVEELEESQRK 716
Rat 717 CPPCWYKFANTFLIWECHPY--WIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPQF 779
Rat 780 EHVLAVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSVLRSF 844
Rat 845 RLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINQE 909
Rat 910 CKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM---EVAGQAMCLIVFMMVMVIGNLVVLNLFL 971
Rat 972 ALLLSSFSADNLAATDDD-GEMNNLQISVIRI-----KKGVAWTKVKVHAF-----------MQA 1019
Rat 1020 HFKQ---------READEVKPLDEL------YEKKANCIAN--------------HT---GVDIH 1052
Rat 1053 RNGDFQK-----------------------------------NGNGT------------------ 1064
Rat 1065 ---------------------------------------TSGIGS----------SVEKYIIDED 1080
Rat 1081 HMSFIN-NPNLTVRVP------------------------------------------------- 1095
Rat 1096 -------------------------------------------------------IAVGESDFEN 1105
Rat 1106 L------NTEDV-----------SSESDPEGSKD------------------------------- 1122
Rat 1123 ------------------------------------KLDD------------------------- 1126
Rat 1127 ----TSSSEG----------------------STIDIKPEVEEVP-------------------- 1145
Rat 1146 ----------------------------------------------------------------- 1145
Rat 1146 -------------------------------------------VEQPEEYLD------------- 1154
Rat 1155 ----------------------------------------------------------------- 1154
Rat 1155 ------------------PDACFTEGCVQR--FKC-----CQVNIEEGLGKSWWILRKTCFLIVE 1194
Rat 1195 HNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWTAYGFVKFFT 1259
Rat 1260 NAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPS 1324
Rat 1325 IMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIDIVNNKTDCEKLMEGNSTEIRWKN 1389
Rat 1390 VKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQPDYEGNIYMYIYFVIFIIFGSFFTL 1454
Rat 1455 NLFIGVIIDNFNQQKKKFGG--QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKIQGIVFDFV 1517
Rat 1518 TQQAFDIVIMMLICLNMVTMMVETDTQSKQMENILYWINLVFVIFFTCECVLKMFALRHYYFTIG 1582
Rat 1583 WNIFDFVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLP 1647
Rat 1648 ALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPI 1712
Rat 1713 LNRPPDCSLDKEHPGSGFKGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADP 1777
Rat 1778 LSEDDFETFYEIWEKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHC 1842
Rat 1843 LDILFAFTKRVLGDSGELD---ILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAY 1904
Rat 1905 RGHL--------------------------------------ARRGFICRKMASN-KLENGGTHR 1930
Rat 1931 DKKESTPSTASLP-----SYDSVTKPDKEKQQRAEEGRR-------ERAKRQK 1971 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Scn8a | NP_062139.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..20 | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 28..62 | 2/8 (25%) | |||
I. /evidence=ECO:0000305 | 114..442 | 150/347 (43%) | |||
Ion_trans | 131..421 | CDD:395416 | 140/294 (48%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 446..530 | 20/103 (19%) | |||
Na_trans_cytopl | 504..700 | CDD:403218 | 30/203 (15%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 576..597 | 5/28 (18%) | |||
II. /evidence=ECO:0000305 | 733..1005 | 141/282 (50%) | |||
Ion_trans | 750..963 | CDD:395416 | 116/215 (54%) | ||
Na_trans_assoc | 989..1190 | CDD:399489 | 72/822 (9%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1105..1146 | 16/303 (5%) | |||
III. /evidence=ECO:0000305 | 1178..1493 | 177/316 (56%) | |||
Ion_trans | 1195..1471 | CDD:395416 | 160/275 (58%) | ||
Na_channel_gate | 1463..1515 | CDD:240441 | 30/53 (57%) | ||
IV. /evidence=ECO:0000305 | 1502..1799 | 149/296 (50%) | |||
Ion_trans | 1520..1774 | CDD:395416 | 132/253 (52%) | ||
GPHH | 1786..1833 | CDD:407139 | 21/46 (46%) | ||
IQ | 1892..1913 | CDD:197470 | 6/58 (10%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1923..1978 | 16/61 (26%) | |||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 112/229 (49%) |
Ion_trans | 705..902 | CDD:278921 | 105/200 (53%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 156/259 (60%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 30/53 (57%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 124/237 (52%) | ||
GPHH | 2331..2386 | CDD:293510 | 24/54 (44%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D37221at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100419 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.720 |