DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gabrg2 and GluClalpha

DIOPT Version :9

Sequence 1:NP_001380704.1 Gene:Gabrg2 / 29709 RGDID:61966 Length:474 Species:Rattus norvegicus
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:440 Identity:144/440 - (32%)
Similarity:230/440 - (52%) Gaps:52/440 - (11%)


- Green bases have known domain annotations that are detailed below.


  Rat    68 ILNNLLEG--YDNKLRPDIGVK----PTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLK 126
            :|:.:|..  ||.::||. |:.    |.::..:::|.||..::.:.|||::.:.|.:.|.|.|||
  Fly    36 VLDQILGAGKYDARIRPS-GINGTDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLK 99

  Rat   127 FN---STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 188
            |:   ..:|.|.|..  ..::|:||.||.|.|:...|.|..||..:||:.:|.|||::|:::...
  Fly   100 FDDIQGRLKYLTLTE--ANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLA 162

  Rat   189 CQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSS-VEVGDTRSWRLYQFSFVGLRNTTEVVK 252
            |.:.|..:|:|...|.|..:|||:...::|:.||... |:|  .::..|.:|:...........|
  Fly   163 CPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGDPVQV--VKNLHLPRFTLEKFLTDYCNSK 225

  Rat   253 TTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTL 317
            |.:|:|..:.|.....|...|:.||.||||.::|::||||||:::.|||||.|||:||:|||.|.
  Fly   226 TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQ 290

  Rat   318 STIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFV---SNRKPSKDKDKKKKNPLLRM 379
            ::....|||.|||..|:|::..||..|||.||:|:..::|..   ||:.....::.|||...|..
  Fly   291 TSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMHKENMKKKRRDLEQ 355

  Rat   380 FSFKAPT--IDIRPRSATIQM------------------NNATHLQERDE-EYGYECLDGKDCAS 423
            .|..|.:  :| ...:||..|                  .:...|::|.: |...:.....:|  
  Fly   356 ASLDAASDLLD-TDSNATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNC-- 417

  Rat   424 FFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFFPTAFCLFNLVYWVSYLY 473
                   |:|  |. .:...|..::|..:||.||..|.|||||||.:||:
  Fly   418 -------CKT--WL-SKFPTRSKRIDVISRITFPLVFALFNLVYWSTYLF 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrg2NP_001380704.1 LIC 68..471 CDD:273305 142/436 (33%)
LGIC_ECD_GABAAR_G 89..270 CDD:349801 55/184 (30%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 142/436 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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