Protein Alignment Gabra5 and Rdl

DIOPT Version :9

• Sequence 1: NP_058991.2
• Gene: Gabra5 / 29707
• RGDID: 61859
• Length: 464
• Species: Rattus norvegicus
• Sequence 2: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Alignment Length: 540
• Identity: 157/540 - (29%)
• Similarity: 239/540 - (44%)
• Gaps: 137/540 - (25%)

  Rat    52 ILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRF-KGP- 114
            |||.....||.|:||..|....:|...:||.|...:|:.:|::|:|.:|||.|.|.||.: |.|
  Fly    62 ILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPG 126

  Rat   115 MQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLED 179
            ::.|.:.:.....||.|||||.|.|:|..|..||.|:.:|:...|::..::||||:|.|||.|:.
  Fly   127 VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQY 191

  Rat   180 FPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEY 244
            ||||...|.::..|:.|...::.|.|.:|.:...:.:|  ..|.|:.::|.......|:.:||.|
  Fly   192 FPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSE--VELPQFRVLGHRQRATEINLTTGNY 254

  Rat   245 TIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARN 309
            :.:.......|.:||::||.|:|..:.||:|.|||||||.:.|||...|||||||||||..|...
  Fly   255 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNA 319

  Rat   310 SLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELI---- 370
            :|||::|..::|.::..|:..||::|:|:|||.|..|| .....::.:...||.:::::.:
  Fly   320 ALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKR-IQMRKQRFMAIQKIAEQKKQQLDGAN 383

  Rat   371 ---LNKSTNAFTTG-------------------------------------KLTH-PPNIPKEQL 394
               .|.:.||...|                                     ..:| .|:.||:.:
  Fly   384 QQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTV 448

  Rat   395 ----------------------------------------------------------------- 394
                                                                             
  Fly   449 SNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQ 513

  Rat   395 ----PGGTGNAVG-----------TASIRASEEKTSESKKT--YNSI-----SKIDKMSRIVFPI 437
                |||.|...|           .|::.|......:.||.  .|.:     |.|||.||||||:
  Fly   514 GGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPV 578

  Rat   438 LFGTFNLVYWATYLNREPVI 457
            .|..|||:||..||:...|:
  Fly   579 CFVCFNLMYWIIYLHVSDVV 598

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gabra5	NP_058991.2	LIC	15..450	CDD:273305	154/531 (29%)
		LGIC_ECD_GABAAR_A5	58..256	CDD:349839	67/199 (34%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	382..414		11/112 (10%)
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	61/184 (33%)
		Neur_chan_memb	274..588	CDD:397193	77/314 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910