DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gabra1 and GluClalpha

DIOPT Version :9

Sequence 1:NP_899155.1 Gene:Gabra1 / 29705 RGDID:61855 Length:455 Species:Rattus norvegicus
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:481 Identity:166/481 - (34%)
Similarity:250/481 - (51%) Gaps:60/481 - (12%)


- Green bases have known domain annotations that are detailed below.


  Rat     6 GLSDYLWAWTLILSTLSGRSYGQPSQDELKDNTTVFTRILDRLLDG--YDNRLRPGLGERVTE-- 66
            |...|.|| .|..::|...|....::...::..   .::||::|..  ||.|:||. |...|:  
  Fly     2 GSGHYFWA-ILYFASLCSASLANNAKINFREKE---KKVLDQILGAGKYDARIRPS-GINGTDGP 61

  Rat    67 --VKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKF---KGPMTVLRLNNLMASKIWTPDTF 126
              |:.:|||.|...:.|..|||::.:.||:.|.||||||   :|.:..|.|..  |:::|.||.|
  Fly    62 AVVRVNIFVRSISKIDDVTMEYSVQLTFREQWTDERLKFDDIQGRLKYLTLTE--ANRVWMPDLF 124

  Rat   127 FHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRA 191
            |.|.|:...||:.|||..:||..:|::||::|:::...|||:|:.:|:|...|.|:..||.:|..
  Fly   125 FSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTN 189

  Rat   192 EVVYEWTR-EPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQ 255
            ::|:.|.. :|.:.|    ....|.::.|.....|....:::||||..:......||:..|::||
  Fly   190 DLVFLWKEGDPVQVV----KNLHLPRFTLEKFLTDYCNSKTNTGEYSCLKVDLLFKREFSYYLIQ 250

  Rat   256 TYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCY 320
            .|:||.|.||:|.|||||::.:||||...||||:|||.|.:.....|||.|:|..|:|.:..||.
  Fly   251 IYIPCCMLVIVSWVSFWLDQGAVPARVSLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCL 315

  Rat   321 AFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDPLIKKNNTYAPTATSYTPNLARGDPGL 385
            .|||.||:|||.|||.::.|         ..|....|:.:.||.......:.....:|...|.. 
  Fly   316 TFVFGALLEFALVNYASRSG---------SNKANMHKENMKKKRRDLEQASLDAASDLLDTDSN- 370

  Rat   386 ATIAKSATI---------------EP----KEVKPETKPPEPK-----KTFNS-----VSKIDRL 421
            ||.|.::..               :|    |.::.|.....||     ||:.|     ..:||.:
  Fly   371 ATFAMASQFARGGGQQKPLVRHPGDPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKRIDVI 435

  Rat   422 SRIAFPLLFGIFNLVYWATYLNREPQ 447
            |||.|||:|.:||||||:|||.||.:
  Fly   436 SRITFPLVFALFNLVYWSTYLFREEE 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabra1NP_899155.1 LIC 7..441 CDD:273305 160/472 (34%)
LGIC_ECD_GABAAR_A1 55..248 CDD:349835 68/200 (34%)
Cys-loop 165..179 CDD:349835 6/13 (46%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 160/472 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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