DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gabrr2 and GluClalpha

DIOPT Version :9

Sequence 1:XP_038965308.1 Gene:Gabrr2 / 29695 RGDID:61902 Length:491 Species:Rattus norvegicus
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:449 Identity:149/449 - (33%)
Similarity:238/449 - (53%) Gaps:53/449 - (11%)


- Green bases have known domain annotations that are detailed below.


  Rat    68 KKNLDVTKIRTGKPRPLLRVEDHDFTMRPA----FGGPAIPVGVDVQVESLDSISEVDMDFTMTL 128
            ||.||          .:|....:|..:||:    ..|||: |.|::.|.|:..|.:|.|::::.|
  Fly    34 KKVLD----------QILGAGKYDARIRPSGINGTDGPAV-VRVNIFVRSISKIDDVTMEYSVQL 87

  Rat   129 YLRHYWRDERLAFPSSSNRSMTFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVL 193
            ..|..|.||||.|.....|..........::|:||:||.:.|....|:....|:.:|:||:|.||
  Fly    88 TFREQWTDERLKFDDIQGRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVL 152

  Rat   194 YSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQK 258
            ||:||::|..|.|:...:|||.|.|||.:.||.:|..||:..||.|| .::..:.:.|.:|.::|
  Fly   153 YSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTNDLVFLWKEGD-PVQVVKNLHLPRFTLEK 216

  Rat   259 FHT---TSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPARV 320
            |.|   .|:    ::||.|:.|.::...:|...::|:|.|.|..::|::||||||:|..||||||
  Fly   217 FLTDYCNSK----TNTGEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFWLDQGAVPARV 277

  Rat   321 SLGIMTVLTMSTIITGVNASMPRVSYIRAVDIYLWVSFVFVFLSVLEYAAVNYLTTV-------- 377
            |||:.|:|||:|..:|:|||:|.|||.:|:|::..|...|||.::||:|.|||.:..        
  Fly   278 SLGVTTLLTMATQTSGINASLPPVSYTKAIDVWTGVCLTFVFGALLEFALVNYASRSGSNKANMH 342

  Rat   378 QEQKERKLRDKFPCTCGMLHSRTMTLDGSYSESEANSLAGYPRSHILPEEERQDKIVVH-----L 437
            :|..::|.||          ....:||.:....:.:|.|.:..:........|.|.:|.     |
  Fly   343 KENMKKKRRD----------LEQASLDAASDLLDTDSNATFAMASQFARGGGQQKPLVRHPGDPL 397

  Rat   438 ALNSEL------TSSRKKGLLKGQMGLYIFQNTHAIDKYSRLIFPAFYIVFNLIYWSVF 490
            ||...|      .:.::....|..:..:..::.. ||..||:.||..:.:|||:|||.:
  Fly   398 ALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRSKR-IDVISRITFPLVFALFNLVYWSTY 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrr2XP_038965308.1 LIC 87..490 CDD:273305 144/428 (34%)
LGIC_ECD_GABAAR_rho 102..287 CDD:349806 65/187 (35%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 149/447 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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