DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gabrr1 and Rdl

DIOPT Version :9

Sequence 1:NP_058987.3 Gene:Gabrr1 / 29694 RGDID:61900 Length:480 Species:Rattus norvegicus
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:569 Identity:172/569 - (30%)
Similarity:256/569 - (44%) Gaps:149/569 - (26%)


- Green bases have known domain annotations that are detailed below.


  Rat    50 AHDDAHKQ---------GSPILKRSSDITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQ 105
            |.:..||:         |..:|   .|:..|.:..|..:    .:|..:||.:|||.:.|||.:.
  Fly    33 AQETGHKRIHTVQAATGGGSML---GDVNISAILDSFSV----SYDKRVRPNYGGPPVEVGVTMY 90

  Rat   106 VESLDSISEVDMDFTMTLYLRHYWKDERLSF---PSTNNLSMTFDGRLVKKIWVPDMFFVHSKRS 167
            |.|:.|:|||.||||:..|.|.:|.|.||::   |....||:  ....:|.|||||.|||:.|:|
  Fly    91 VLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSV--GSEFIKNIWVPDTFFVNEKQS 153

  Rat   168 FIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWK 232
            :.|..||.|..:||...|.:..|:|:|:||.|.|:...||:|.|.|.:||||:.||..|:..:|:
  Fly   154 YFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWR 218

  Rat   233 KGNDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMV 297
            .|..|:.....:.|.||.:.. |.........:||.|:||.......|.:.::|:|.|.|:.|:|
  Fly   219 DGLSSVGMSSEVELPQFRVLG-HRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 282

  Rat   298 MLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLE 362
            ::||||||::|.|.||||.||:||||||:|:::..||::|::||:|::|:||...||.||.|:||
  Fly   283 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLE 347

  Rat   363 YAAVNYLT-TVQERKER-----KLREK----------------ISCTCGLPQPRGVMLDSSYSDG 405
            ||.|.|:. .:|.||:|     |:.|:                .:...|.|...||........|
  Fly   348 YATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPG 412

  Rat   406 EVNDLG---GYMPENG-------------EKPDRMM----------------------------- 425
            ...::|   |..||:|             ..|.:.:                             
  Fly   413 GGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEV 477

  Rat   426 ---------------VQLTLASERGSPQRKS-----------------------QRGSYVSMRIN 452
                           ::.|:...||.||...                       :.|......:.
  Fly   478 RFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVP 542

  Rat   453 THA----------------------IDKYSRIIFPAAYILFNLIYWSIF 479
            .|.                      |||||||:||..::.|||:||.|:
  Fly   543 AHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gabrr1NP_058987.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..67 5/25 (20%)
LIC 76..479 CDD:273305 164/532 (31%)
LGIC_ECD_GABAAR_rho 97..282 CDD:349806 72/187 (39%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 71/185 (38%)
Neur_chan_memb 274..588 CDD:397193 81/313 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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