DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arhgap40 and cv-c

DIOPT Version :10

Sequence 1:NP_001385617.1 Gene:Arhgap40 / 296323 RGDID:1562428 Length:672 Species:Rattus norvegicus
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:548 Identity:136/548 - (24%)
Similarity:220/548 - (40%) Gaps:116/548 - (21%)


- Green bases have known domain annotations that are detailed below.


  Rat    45 SPGPSTGPTNLPRYPLKPRPADCAY-----SRLSWAESLSMDGFWPGVERIQQRGERKKEDCGGS 104
            ||..|: |...|..|...|.:...:     |:|...:|.....::          ...:|...|.
  Fly  1645 SPNRSS-PKRTPTTPRSMRTSPLHFFSSPMSQLKEGKSDDSSSYY----------SDSQESSTGG 1698

  Rat   105 RSQLLEGDAESQWLQDTGLAGLVGGLGLDDDHQG--LL-----STLTQTQVAAVCR--------- 153
            :..|.:.....::||.||....:|.....:.|||  ||     |..|:.:|..:.|         
  Fly  1699 KLSLRKPSKARRFLQRTGKVDDIGAHSDSECHQGRKLLIKDANSNTTEVKVKKLTRGGSLNLGKD 1763

  Rat   154 --RLDIYARSARRRQKAPVRDVRDIFGVFTSREAAPENGDSGMKWTEFNSEDSASPLRPAGGPQE 216
              :.|.:..|:.|.:.             |||:.|.            |.||:|......|..::
  Fly  1764 PKKRDGFRSSSFRSRS-------------TSRKEAK------------NDEDTAGATTNGGSKRQ 1803

  Rat   217 PAGMEEVFNMESAYSEQAAVLLQRTWSSPEGARAWGKGCLPRFRIPKGRLGVTRIGDLSSRDMKK 281
            |......|.||    |:..::.::.:|..........|.:|...:..|:|.:.|           
  Fly  1804 PVVRWHSFQME----ERPNMIFRKCFSKKIEPLQEDAGGMPFAAMSAGQLQIIR----------- 1853

  Rat   282 ILPLALIELTALYD------------ILGLDLKRSKGRKWKGADSGLFGVPLHSLLEADHRVFPS 334
              .|||:.||...:            .|...:|:.|...:|  |..:|||||..:|:...:.   
  Fly  1854 --KLALVTLTGHMERYCPSHRSGWNWELPKFIKKIKMPDYK--DKKVFGVPLLMILQRSGQT--- 1911

  Rat   335 TQVPLLLQALLSCLEKRGLDTEGILRVPGSQARVKGLEQKLE-RDFYAGLVS-WDKVHPNDASDL 397
              :||.::|....|:...||..||.|..|.::|:..|.:::| .|..|..:. :|.....|.:|:
  Fly  1912 --LPLAVRAAFRWLQLNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVFDLQQAYDVADM 1974

  Rat   398 LKRFLRKLPAPLLTAEYLPAFAAVPNIPDLKQRLQALHLLVLLLPEPNRNTLKALLEFLRKVAAQ 462
            ||::.|:||..|||.:....|.|:......:.||.|:...|||||:.||..|..|||||..|||.
  Fly  1975 LKQYFRELPESLLTTKMSETFVAIFQHLPAEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAAN 2039

  Rat   463 EQHNKMTLWNVSTVMAPNLF---LPRG------RPPKLAQGE-----KQLAEGAAEVVCM--MVQ 511
            .|.|:||..|:...:|.::|   :..|      .|.:..:|.     |:|||..|...|:  |::
  Fly  2040 SQQNQMTSNNLGVCLAQSIFHSSISTGSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIE 2104

  Rat   512 YQDLLWTVASFLVAQVRKLNDSNCRRSQ 539
            :...::|.|.   .::.|.|.|....|:
  Fly  2105 HYKQIYTAAK---EKLSKCNFSYMEESK 2129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arhgap40NP_001385617.1 RhoGAP 316..528 CDD:470621 72/229 (31%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937
RhoGAP_DLC1 1893..2116 CDD:239840 73/230 (32%)
SRPBCC 2148..2343 CDD:472699
Blue background indicates that the domain is not in the aligned region.

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